Hb_022115_020

Information

Type -
Description -
Location Contig22115: 20208-25781
Sequence    

Annotation

kegg
ID pop:POPTR_0018s12960g
description POPTRDRAFT_826013; hypothetical protein
nr
ID XP_012078818.1
description PREDICTED: glucan endo-1,3-beta-glucosidase 11 isoform X2 [Jatropha curcas]
swissprot
ID Q8L868
description Glucan endo-1,3-beta-glucosidase 11 OS=Arabidopsis thaliana GN=At1g32860 PE=1 SV=1
trembl
ID B9IMX6
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s12960g PE=3 SV=2
Gene Ontology
ID GO:0031225
description glucan endo- -beta-glucosidase 14-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22818: 20358-25753
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_022115_020 0.0 - - PREDICTED: glucan endo-1,3-beta-glucosidase 11 isoform X2 [Jatropha curcas]
2 Hb_001511_060 0.0587496734 - - PREDICTED: sorting and assembly machinery component 50 homolog [Jatropha curcas]
3 Hb_155159_020 0.0599763005 - - PREDICTED: clathrin light chain 1-like [Jatropha curcas]
4 Hb_002110_190 0.0609655791 - - PREDICTED: pentatricopeptide repeat-containing protein At5g27460 [Jatropha curcas]
5 Hb_002809_050 0.0621442982 - - PREDICTED: protein FIZZY-RELATED 2 [Jatropha curcas]
6 Hb_000028_180 0.0629630111 - - PREDICTED: probable serine/threonine protein kinase IREH1 isoform X2 [Jatropha curcas]
7 Hb_000603_150 0.0657129146 - - PREDICTED: guanine nucleotide-binding protein alpha-1 subunit [Jatropha curcas]
8 Hb_015934_040 0.0663660093 - - PREDICTED: protein Hook homolog 3-like [Jatropha curcas]
9 Hb_005144_160 0.0665855682 - - PREDICTED: uncharacterized protein LOC105628018 isoform X1 [Jatropha curcas]
10 Hb_000260_350 0.067972491 - - conserved hypothetical protein [Ricinus communis]
11 Hb_006634_070 0.0690116125 - - PREDICTED: calcium-dependent protein kinase 13 [Jatropha curcas]
12 Hb_001252_120 0.0696530141 - - PREDICTED: delta-1-pyrroline-5-carboxylate synthase-like [Gossypium raimondii]
13 Hb_001159_130 0.0700031493 - - PREDICTED: protein cornichon homolog 4 [Jatropha curcas]
14 Hb_010128_080 0.0700471987 - - PREDICTED: pentatricopeptide repeat-containing protein At1g63330-like isoform X1 [Jatropha curcas]
15 Hb_001377_490 0.0702655913 - - PREDICTED: uncharacterized protein LOC105642821 [Jatropha curcas]
16 Hb_000185_030 0.0703822274 - - PREDICTED: arginine-glutamic acid dipeptide repeats protein-like isoform X2 [Jatropha curcas]
17 Hb_007479_040 0.0704787495 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000580_180 0.0717506784 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000297_010 0.0718196009 - - PREDICTED: uncharacterized protein LOC105637916 isoform X2 [Jatropha curcas]
20 Hb_000331_550 0.0721395321 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 67 [Jatropha curcas]

Gene co-expression network

sample Hb_022115_020 Hb_022115_020 Hb_001511_060 Hb_001511_060 Hb_022115_020--Hb_001511_060 Hb_155159_020 Hb_155159_020 Hb_022115_020--Hb_155159_020 Hb_002110_190 Hb_002110_190 Hb_022115_020--Hb_002110_190 Hb_002809_050 Hb_002809_050 Hb_022115_020--Hb_002809_050 Hb_000028_180 Hb_000028_180 Hb_022115_020--Hb_000028_180 Hb_000603_150 Hb_000603_150 Hb_022115_020--Hb_000603_150 Hb_000260_350 Hb_000260_350 Hb_001511_060--Hb_000260_350 Hb_168978_010 Hb_168978_010 Hb_001511_060--Hb_168978_010 Hb_000349_260 Hb_000349_260 Hb_001511_060--Hb_000349_260 Hb_000359_060 Hb_000359_060 Hb_001511_060--Hb_000359_060 Hb_003994_230 Hb_003994_230 Hb_001511_060--Hb_003994_230 Hb_001159_130 Hb_001159_130 Hb_155159_020--Hb_001159_130 Hb_084646_010 Hb_084646_010 Hb_155159_020--Hb_084646_010 Hb_000116_270 Hb_000116_270 Hb_155159_020--Hb_000116_270 Hb_155159_020--Hb_000603_150 Hb_000787_020 Hb_000787_020 Hb_155159_020--Hb_000787_020 Hb_007479_040 Hb_007479_040 Hb_002110_190--Hb_007479_040 Hb_004567_090 Hb_004567_090 Hb_002110_190--Hb_004567_090 Hb_011037_030 Hb_011037_030 Hb_002110_190--Hb_011037_030 Hb_026198_070 Hb_026198_070 Hb_002110_190--Hb_026198_070 Hb_054865_150 Hb_054865_150 Hb_002110_190--Hb_054865_150 Hb_003680_120 Hb_003680_120 Hb_002110_190--Hb_003680_120 Hb_000260_010 Hb_000260_010 Hb_002809_050--Hb_000260_010 Hb_000213_010 Hb_000213_010 Hb_002809_050--Hb_000213_010 Hb_006634_070 Hb_006634_070 Hb_002809_050--Hb_006634_070 Hb_003177_030 Hb_003177_030 Hb_002809_050--Hb_003177_030 Hb_006938_080 Hb_006938_080 Hb_002809_050--Hb_006938_080 Hb_001252_120 Hb_001252_120 Hb_000028_180--Hb_001252_120 Hb_004324_130 Hb_004324_130 Hb_000028_180--Hb_004324_130 Hb_000028_180--Hb_007479_040 Hb_004724_150 Hb_004724_150 Hb_000028_180--Hb_004724_150 Hb_002481_080 Hb_002481_080 Hb_000028_180--Hb_002481_080 Hb_006455_120 Hb_006455_120 Hb_000603_150--Hb_006455_120 Hb_000603_150--Hb_001159_130 Hb_000205_300 Hb_000205_300 Hb_000603_150--Hb_000205_300 Hb_000120_670 Hb_000120_670 Hb_000603_150--Hb_000120_670 Hb_000580_180 Hb_000580_180 Hb_000603_150--Hb_000580_180 Hb_003549_150 Hb_003549_150 Hb_000603_150--Hb_003549_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.3969 11.4913 8.84392 15.4513 12.9908 12.1635
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.5889 13.0919 17.3666 13.6664 9.11046

CAGE analysis