Hb_022115_030

Information

Type -
Description -
Location Contig22115: 29548-30471
Sequence    

Annotation

kegg
ID rcu:RCOM_1075160
description Cucumber peeling cupredoxin, putative
nr
ID XP_012078945.1
description PREDICTED: umecyanin-like [Jatropha curcas]
swissprot
ID P42849
description Umecyanin OS=Armoracia rusticana PE=1 SV=1
trembl
ID A0A067KBN2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13353 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22819: 29458-30522
cDNA
(Sanger)
(ID:Location)		 035_K20.ab1: 29452-30522

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_022115_030 0.0 - - PREDICTED: umecyanin-like [Jatropha curcas]
2 Hb_032717_030 0.0692946489 - - PREDICTED: CASP-like protein 1B2 [Jatropha curcas]
3 Hb_000120_700 0.0784435235 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
4 Hb_005433_050 0.0848544923 - - PREDICTED: uncharacterized protein At1g66480-like [Populus euphratica]
5 Hb_003073_020 0.0856630593 - - protein binding protein, putative [Ricinus communis]
6 Hb_023732_020 0.0954195937 - - PREDICTED: fatty acyl-CoA reductase 3-like [Jatropha curcas]
7 Hb_000483_020 0.0957807704 - - PREDICTED: 7-deoxyloganetic acid glucosyltransferase-like isoform X2 [Jatropha curcas]
8 Hb_002249_180 0.1010251998 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
9 Hb_000203_240 0.1027871712 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
10 Hb_009780_060 0.1036685473 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranyl geranyl pyrophosphate synthase, putative [Ricinus communis]
11 Hb_012506_080 0.1044721492 - - amino acid transporter, putative [Ricinus communis]
12 Hb_004592_020 0.1050470864 - - PREDICTED: non-specific lipid-transfer protein 1-like [Jatropha curcas]
13 Hb_081224_010 0.105786297 - - hypothetical protein OsJ_17572 [Oryza sativa Japonica Group]
14 Hb_000445_020 0.1066010173 - - GABA-specific permease, putative [Ricinus communis]
15 Hb_023080_010 0.1092885547 - - PREDICTED: probable serine incorporator [Jatropha curcas]
16 Hb_001675_210 0.1118750865 - - PREDICTED: protein PLANT CADMIUM RESISTANCE 8-like [Jatropha curcas]
17 Hb_000828_030 0.1146838233 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
18 Hb_106528_020 0.1149183166 - - Cationic peroxidase 2 precursor [Theobroma cacao]
19 Hb_002900_020 0.11681339 - - hypothetical protein POPTR_0008s06270g [Populus trichocarpa]
20 Hb_004981_020 0.1178093961 - - PREDICTED: uncharacterized protein LOC103706119 [Phoenix dactylifera]

Gene co-expression network

sample Hb_022115_030 Hb_022115_030 Hb_032717_030 Hb_032717_030 Hb_022115_030--Hb_032717_030 Hb_000120_700 Hb_000120_700 Hb_022115_030--Hb_000120_700 Hb_005433_050 Hb_005433_050 Hb_022115_030--Hb_005433_050 Hb_003073_020 Hb_003073_020 Hb_022115_030--Hb_003073_020 Hb_023732_020 Hb_023732_020 Hb_022115_030--Hb_023732_020 Hb_000483_020 Hb_000483_020 Hb_022115_030--Hb_000483_020 Hb_032717_030--Hb_003073_020 Hb_032717_030--Hb_005433_050 Hb_020141_020 Hb_020141_020 Hb_032717_030--Hb_020141_020 Hb_100786_010 Hb_100786_010 Hb_032717_030--Hb_100786_010 Hb_000828_030 Hb_000828_030 Hb_032717_030--Hb_000828_030 Hb_000120_700--Hb_023732_020 Hb_000120_700--Hb_032717_030 Hb_115007_010 Hb_115007_010 Hb_000120_700--Hb_115007_010 Hb_004448_030 Hb_004448_030 Hb_000120_700--Hb_004448_030 Hb_000120_700--Hb_003073_020 Hb_000203_240 Hb_000203_240 Hb_005433_050--Hb_000203_240 Hb_106528_020 Hb_106528_020 Hb_005433_050--Hb_106528_020 Hb_010358_010 Hb_010358_010 Hb_005433_050--Hb_010358_010 Hb_000563_060 Hb_000563_060 Hb_005433_050--Hb_000563_060 Hb_002944_020 Hb_002944_020 Hb_005433_050--Hb_002944_020 Hb_000229_080 Hb_000229_080 Hb_005433_050--Hb_000229_080 Hb_003073_020--Hb_023732_020 Hb_039363_010 Hb_039363_010 Hb_003073_020--Hb_039363_010 Hb_000828_020 Hb_000828_020 Hb_003073_020--Hb_000828_020 Hb_002835_020 Hb_002835_020 Hb_003073_020--Hb_002835_020 Hb_003073_020--Hb_005433_050 Hb_023080_010 Hb_023080_010 Hb_023732_020--Hb_023080_010 Hb_000712_060 Hb_000712_060 Hb_023732_020--Hb_000712_060 Hb_023732_020--Hb_000828_020 Hb_023732_020--Hb_032717_030 Hb_039562_010 Hb_039562_010 Hb_023732_020--Hb_039562_010 Hb_002900_020 Hb_002900_020 Hb_000483_020--Hb_002900_020 Hb_004592_020 Hb_004592_020 Hb_000483_020--Hb_004592_020 Hb_000488_040 Hb_000488_040 Hb_000483_020--Hb_000488_040 Hb_001442_080 Hb_001442_080 Hb_000483_020--Hb_001442_080 Hb_000483_020--Hb_032717_030 Hb_178389_020 Hb_178389_020 Hb_000483_020--Hb_178389_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.579136 0 0.0417261 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0785797 0 14.5601 0.304463

CAGE analysis