Hb_022132_040

Information

Type -
Description -
Location Contig22132: 20873-21769
Sequence    

Annotation

kegg
ID pop:POPTR_0011s11670g
description POPTRDRAFT_806008; hypothetical protein
nr
ID XP_012065122.1
description PREDICTED: Werner Syndrome-like exonuclease [Jatropha curcas]
swissprot
ID Q9VE86
description Werner Syndrome-like exonuclease OS=Drosophila melanogaster GN=WRNexo PE=1 SV=2
trembl
ID A0A067L6N6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05559 PE=4 SV=1
Gene Ontology
ID GO:0003676
description werner syndrome-like exonuclease

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 014_M17r.ab1: 20144-23899

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_022132_040 0.0 - - PREDICTED: Werner Syndrome-like exonuclease [Jatropha curcas]
2 Hb_108706_010 0.204114605 - - PREDICTED: uncharacterized protein LOC105772114 [Gossypium raimondii]
3 Hb_000363_440 0.2658935616 - - -
4 Hb_120155_010 0.3189599756 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
5 Hb_000061_390 0.3225838048 - - PREDICTED: uncharacterized protein LOC105640583 [Jatropha curcas]
6 Hb_000362_220 0.3258765816 - - PREDICTED: UDP-glycosyltransferase 79B6-like [Jatropha curcas]
7 Hb_001959_040 0.3360726723 - - PREDICTED: beta-amylase 1, chloroplastic [Jatropha curcas]
8 Hb_000665_030 0.3466235599 - - PREDICTED: uncharacterized protein LOC105637585 isoform X1 [Jatropha curcas]
9 Hb_017434_060 0.3519097427 - - PREDICTED: 60S ribosomal export protein NMD3 [Jatropha curcas]
10 Hb_001060_110 0.3533020624 - - serine/threonine-protein kinase cx32, putative [Ricinus communis]
11 Hb_005396_070 0.3546307904 - - hypothetical protein EUGRSUZ_B03067 [Eucalyptus grandis]
12 Hb_000003_050 0.356461298 - - Cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [Theobroma cacao]
13 Hb_000261_490 0.3569645533 - - PREDICTED: cyclin-dependent kinase inhibitor 5 [Jatropha curcas]
14 Hb_005396_050 0.3577875961 - - PREDICTED: phosphoenolpyruvate carboxylase 4 [Jatropha curcas]
15 Hb_004225_180 0.3598071425 - - bel1 homeotic protein, putative [Ricinus communis]
16 Hb_001268_390 0.3600934505 - - PREDICTED: uncharacterized protein LOC105108367 isoform X1 [Populus euphratica]
17 Hb_000500_140 0.3624190184 transcription factor TF Family: MYB-related PREDICTED: protein REVEILLE 4 [Jatropha curcas]
18 Hb_000457_170 0.3625338517 - - PREDICTED: uncharacterized protein LOC105633066 [Jatropha curcas]
19 Hb_132915_010 0.3640134886 - - PREDICTED: uncharacterized protein LOC103700431, partial [Phoenix dactylifera]
20 Hb_000326_030 0.3653502343 - - hypothetical protein PRUPE_ppa013909mg [Prunus persica]

Gene co-expression network

sample Hb_022132_040 Hb_022132_040 Hb_108706_010 Hb_108706_010 Hb_022132_040--Hb_108706_010 Hb_000363_440 Hb_000363_440 Hb_022132_040--Hb_000363_440 Hb_120155_010 Hb_120155_010 Hb_022132_040--Hb_120155_010 Hb_000061_390 Hb_000061_390 Hb_022132_040--Hb_000061_390 Hb_000362_220 Hb_000362_220 Hb_022132_040--Hb_000362_220 Hb_001959_040 Hb_001959_040 Hb_022132_040--Hb_001959_040 Hb_001221_270 Hb_001221_270 Hb_108706_010--Hb_001221_270 Hb_108706_010--Hb_120155_010 Hb_017434_060 Hb_017434_060 Hb_108706_010--Hb_017434_060 Hb_002025_310 Hb_002025_310 Hb_108706_010--Hb_002025_310 Hb_055384_010 Hb_055384_010 Hb_108706_010--Hb_055384_010 Hb_000363_440--Hb_000362_220 Hb_005702_030 Hb_005702_030 Hb_000363_440--Hb_005702_030 Hb_000457_170 Hb_000457_170 Hb_000363_440--Hb_000457_170 Hb_000363_440--Hb_017434_060 Hb_000050_090 Hb_000050_090 Hb_000363_440--Hb_000050_090 Hb_120155_010--Hb_055384_010 Hb_000125_120 Hb_000125_120 Hb_120155_010--Hb_000125_120 Hb_001277_220 Hb_001277_220 Hb_120155_010--Hb_001277_220 Hb_000059_040 Hb_000059_040 Hb_120155_010--Hb_000059_040 Hb_000200_140 Hb_000200_140 Hb_120155_010--Hb_000200_140 Hb_000548_050 Hb_000548_050 Hb_120155_010--Hb_000548_050 Hb_001049_030 Hb_001049_030 Hb_000061_390--Hb_001049_030 Hb_004310_050 Hb_004310_050 Hb_000061_390--Hb_004310_050 Hb_012573_080 Hb_012573_080 Hb_000061_390--Hb_012573_080 Hb_000173_400 Hb_000173_400 Hb_000061_390--Hb_000173_400 Hb_000987_140 Hb_000987_140 Hb_000061_390--Hb_000987_140 Hb_000011_080 Hb_000011_080 Hb_000061_390--Hb_000011_080 Hb_001060_110 Hb_001060_110 Hb_000362_220--Hb_001060_110 Hb_005288_200 Hb_005288_200 Hb_000362_220--Hb_005288_200 Hb_003321_010 Hb_003321_010 Hb_000362_220--Hb_003321_010 Hb_001277_270 Hb_001277_270 Hb_000362_220--Hb_001277_270 Hb_000362_220--Hb_017434_060 Hb_000703_240 Hb_000703_240 Hb_000362_220--Hb_000703_240 Hb_000005_330 Hb_000005_330 Hb_001959_040--Hb_000005_330 Hb_000261_440 Hb_000261_440 Hb_001959_040--Hb_000261_440 Hb_001587_190 Hb_001587_190 Hb_001959_040--Hb_001587_190 Hb_004225_180 Hb_004225_180 Hb_001959_040--Hb_004225_180 Hb_022092_120 Hb_022092_120 Hb_001959_040--Hb_022092_120 Hb_001047_120 Hb_001047_120 Hb_001959_040--Hb_001047_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0570723 0.0764528 0.0190168 0 0 0.0582472
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0581336 0 0.0834978 0.0184377 0

CAGE analysis