Hb_022132_050

Information

Type -
Description -
Location Contig22132: 22289-24167
Sequence    

Annotation

kegg
ID rcu:RCOM_1399360
description GTP binding protein, putative
nr
ID XP_002526350.1
description GTP binding protein, putative [Ricinus communis]
swissprot
ID O82497
description DAR GTPase 2, mitochondrial OS=Arabidopsis thaliana GN=DGP2 PE=3 SV=1
trembl
ID B9SK31
description GTP binding protein, putative OS=Ricinus communis GN=RCOM_1399360 PE=4 SV=1
Gene Ontology
ID GO:0005525
description mitochondrial ribosome-associated gtpase 1 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22834: 22734-23072
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_022132_050 0.0 - - GTP binding protein, putative [Ricinus communis]
2 Hb_073973_130 0.0630691446 - - PREDICTED: prolyl-tRNA synthetase associated domain-containing protein 1 [Jatropha curcas]
3 Hb_002872_030 0.0657582947 - - PREDICTED: OTU domain-containing protein DDB_G0284757 [Jatropha curcas]
4 Hb_000392_230 0.0658480003 - - conserved hypothetical protein [Ricinus communis]
5 Hb_006588_070 0.0702329434 - - 20 kD nuclear cap binding protein, putative [Ricinus communis]
6 Hb_000649_230 0.071149377 - - PREDICTED: ubiquitin-conjugating enzyme E2 variant 1A-like [Jatropha curcas]
7 Hb_027428_010 0.0730086974 - - alpha-1,3-mannosyltransferase, putative [Ricinus communis]
8 Hb_004116_060 0.0753179685 - - PREDICTED: nuclear pore complex protein NUP88 [Jatropha curcas]
9 Hb_007416_300 0.0764141337 - - PREDICTED: COP9 signalosome complex subunit 5b-like [Jatropha curcas]
10 Hb_001186_090 0.077130972 - - PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein 2 [Jatropha curcas]
11 Hb_002820_050 0.0774829139 - - PREDICTED: putative glutathione-specific gamma-glutamylcyclotransferase 2 [Jatropha curcas]
12 Hb_120410_010 0.0806908193 - - PREDICTED: vesicle-associated membrane protein 727-like [Solanum tuberosum]
13 Hb_010381_090 0.0815801383 - - PREDICTED: protein FLX-like 3 [Jatropha curcas]
14 Hb_001357_350 0.081966041 - - conserved hypothetical protein [Ricinus communis]
15 Hb_004453_130 0.0821352757 - - PREDICTED: tRNA (cytosine-5-)-methyltransferase isoform X1 [Jatropha curcas]
16 Hb_010315_060 0.0824441959 - - PREDICTED: probable arabinosyltransferase ARAD1 [Jatropha curcas]
17 Hb_005588_030 0.0826774711 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 14 homolog [Eucalyptus grandis]
18 Hb_000107_190 0.0830691663 - - 50S ribosomal protein L20 [Hevea brasiliensis]
19 Hb_005730_120 0.0837413819 - - PREDICTED: protein WHI4 [Jatropha curcas]
20 Hb_005337_090 0.0839953847 - - PREDICTED: serine/threonine-protein kinase TOUSLED-like [Jatropha curcas]

Gene co-expression network

sample Hb_022132_050 Hb_022132_050 Hb_073973_130 Hb_073973_130 Hb_022132_050--Hb_073973_130 Hb_002872_030 Hb_002872_030 Hb_022132_050--Hb_002872_030 Hb_000392_230 Hb_000392_230 Hb_022132_050--Hb_000392_230 Hb_006588_070 Hb_006588_070 Hb_022132_050--Hb_006588_070 Hb_000649_230 Hb_000649_230 Hb_022132_050--Hb_000649_230 Hb_027428_010 Hb_027428_010 Hb_022132_050--Hb_027428_010 Hb_000107_190 Hb_000107_190 Hb_073973_130--Hb_000107_190 Hb_073973_130--Hb_027428_010 Hb_073973_130--Hb_002872_030 Hb_005337_090 Hb_005337_090 Hb_073973_130--Hb_005337_090 Hb_000610_010 Hb_000610_010 Hb_073973_130--Hb_000610_010 Hb_002872_030--Hb_027428_010 Hb_010381_090 Hb_010381_090 Hb_002872_030--Hb_010381_090 Hb_008453_140 Hb_008453_140 Hb_002872_030--Hb_008453_140 Hb_007416_300 Hb_007416_300 Hb_002872_030--Hb_007416_300 Hb_002872_030--Hb_006588_070 Hb_010315_060 Hb_010315_060 Hb_000392_230--Hb_010315_060 Hb_000392_230--Hb_000649_230 Hb_000751_030 Hb_000751_030 Hb_000392_230--Hb_000751_030 Hb_001195_260 Hb_001195_260 Hb_000392_230--Hb_001195_260 Hb_000392_230--Hb_073973_130 Hb_000776_100 Hb_000776_100 Hb_006588_070--Hb_000776_100 Hb_006588_070--Hb_027428_010 Hb_001051_080 Hb_001051_080 Hb_006588_070--Hb_001051_080 Hb_000096_120 Hb_000096_120 Hb_006588_070--Hb_000096_120 Hb_000649_230--Hb_010315_060 Hb_000649_230--Hb_027428_010 Hb_000649_230--Hb_073973_130 Hb_003213_010 Hb_003213_010 Hb_000649_230--Hb_003213_010 Hb_027428_010--Hb_005337_090 Hb_000185_070 Hb_000185_070 Hb_027428_010--Hb_000185_070 Hb_027428_010--Hb_010381_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.31858 1.54918 3.18641 2.14364 2.28336 3.17853
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.28317 2.6929 1.33764 1.55997 1.27239

CAGE analysis