Hb_022137_040

Information

Type -
Description -
Location Contig22137: 30310-31902
Sequence    

Annotation

kegg
ID rcu:RCOM_1683800
description multidrug resistance pump, putative
nr
ID XP_012087223.1
description PREDICTED: MATE efflux family protein LAL5-like [Jatropha curcas]
swissprot
ID Q8K0H1
description Multidrug and toxin extrusion protein 1 OS=Mus musculus GN=Slc47a1 PE=1 SV=2
trembl
ID B9RC22
description MATE efflux family protein OS=Ricinus communis GN=RCOM_1683800 PE=3 SV=1
Gene Ontology
ID GO:0016020
description mate efflux family protein 5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_022137_040 0.0 - - PREDICTED: MATE efflux family protein LAL5-like [Jatropha curcas]
2 Hb_131956_010 0.1858840851 - - hypothetical protein JCGZ_19531 [Jatropha curcas]
3 Hb_001277_140 0.2423694325 - - PREDICTED: plasma membrane calcium-transporting ATPase 2-like [Takifugu rubripes]
4 Hb_000638_210 0.2434915398 - - Pectin lyase-like superfamily protein isoform 1 [Theobroma cacao]
5 Hb_000567_080 0.243845398 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH30-like [Jatropha curcas]
6 Hb_009838_060 0.2447535728 - - conserved hypothetical protein [Ricinus communis]
7 Hb_012760_010 0.2454633879 - - PREDICTED: uncharacterized protein At4g08330, chloroplastic [Jatropha curcas]
8 Hb_154471_010 0.2532806697 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
9 Hb_002235_240 0.2568279184 - - xenotropic and polytropic murine leukemia virus receptor ids-4, putative [Ricinus communis]
10 Hb_000072_330 0.257252703 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001546_110 0.2592434758 - - PREDICTED: leucine-rich repeat extensin-like protein 3 [Jatropha curcas]
12 Hb_020248_010 0.2641975911 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
13 Hb_005656_140 0.2694998784 transcription factor TF Family: bZIP PREDICTED: basic leucine zipper 9 [Jatropha curcas]
14 Hb_129204_060 0.2715994252 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 20 [Jatropha curcas]
15 Hb_015978_030 0.2765650707 - - Zinc finger protein GIS2 [Medicago truncatula]
16 Hb_001225_090 0.2767480887 transcription factor TF Family: RWP-RK transcription factor, putative [Ricinus communis]
17 Hb_088084_010 0.2788868641 - - PREDICTED: putative calcium-transporting ATPase 13, plasma membrane-type [Jatropha curcas]
18 Hb_001863_150 0.280998648 - - VQ motif-containing family protein [Populus trichocarpa]
19 Hb_001584_220 0.2823395592 - - galactinol synthase [Manihot esculenta]
20 Hb_001922_160 0.2855495763 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]

Gene co-expression network

sample Hb_022137_040 Hb_022137_040 Hb_131956_010 Hb_131956_010 Hb_022137_040--Hb_131956_010 Hb_001277_140 Hb_001277_140 Hb_022137_040--Hb_001277_140 Hb_000638_210 Hb_000638_210 Hb_022137_040--Hb_000638_210 Hb_000567_080 Hb_000567_080 Hb_022137_040--Hb_000567_080 Hb_009838_060 Hb_009838_060 Hb_022137_040--Hb_009838_060 Hb_012760_010 Hb_012760_010 Hb_022137_040--Hb_012760_010 Hb_002235_240 Hb_002235_240 Hb_131956_010--Hb_002235_240 Hb_129204_060 Hb_129204_060 Hb_131956_010--Hb_129204_060 Hb_131956_010--Hb_009838_060 Hb_004800_190 Hb_004800_190 Hb_131956_010--Hb_004800_190 Hb_004724_130 Hb_004724_130 Hb_131956_010--Hb_004724_130 Hb_088084_010 Hb_088084_010 Hb_001277_140--Hb_088084_010 Hb_001529_030 Hb_001529_030 Hb_001277_140--Hb_001529_030 Hb_002760_060 Hb_002760_060 Hb_001277_140--Hb_002760_060 Hb_001922_160 Hb_001922_160 Hb_001277_140--Hb_001922_160 Hb_001277_140--Hb_131956_010 Hb_003053_060 Hb_003053_060 Hb_001277_140--Hb_003053_060 Hb_005656_140 Hb_005656_140 Hb_000638_210--Hb_005656_140 Hb_001369_570 Hb_001369_570 Hb_000638_210--Hb_001369_570 Hb_003078_050 Hb_003078_050 Hb_000638_210--Hb_003078_050 Hb_000638_210--Hb_009838_060 Hb_008173_030 Hb_008173_030 Hb_000638_210--Hb_008173_030 Hb_000634_070 Hb_000634_070 Hb_000638_210--Hb_000634_070 Hb_000215_410 Hb_000215_410 Hb_000567_080--Hb_000215_410 Hb_000567_080--Hb_129204_060 Hb_004032_420 Hb_004032_420 Hb_000567_080--Hb_004032_420 Hb_000567_080--Hb_002235_240 Hb_005841_080 Hb_005841_080 Hb_000567_080--Hb_005841_080 Hb_000567_080--Hb_131956_010 Hb_003494_060 Hb_003494_060 Hb_009838_060--Hb_003494_060 Hb_001141_360 Hb_001141_360 Hb_009838_060--Hb_001141_360 Hb_009838_060--Hb_012760_010 Hb_009838_060--Hb_005656_140 Hb_001546_110 Hb_001546_110 Hb_009838_060--Hb_001546_110 Hb_185513_010 Hb_185513_010 Hb_009838_060--Hb_185513_010 Hb_000483_040 Hb_000483_040 Hb_012760_010--Hb_000483_040 Hb_012760_010--Hb_001546_110 Hb_012760_010--Hb_003078_050 Hb_000069_230 Hb_000069_230 Hb_012760_010--Hb_000069_230 Hb_012760_010--Hb_003494_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.37191 31.133 0.223145 0.39419 2.05398 1.68015
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.932751 5.02224 2.41817 1.28051 0

CAGE analysis