Hb_022137_060

Information

Type -
Description -
Location Contig22137: 44071-48502
Sequence    

Annotation

kegg
ID pop:POPTR_0003s12170g
description POPTRDRAFT_799918; membrane bound O-acyl transferase family protein
nr
ID AGL74879.1
description 1-acylglycerophosphocholine O-acyltransferase [Vernicia fordii]
swissprot
ID F4IDU4
description Lysophospholipid acyltransferase 1 OS=Arabidopsis thaliana GN=LPLAT1 PE=1 SV=1
trembl
ID R4QWS4
description 1-acylglycerophosphocholine O-acyltransferase OS=Vernicia fordii PE=2 SV=1
Gene Ontology
ID GO:0016021
description lysophospholipid acyltransferase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22844: 44447-48501 , PASA_asmbl_22845: 44444-48501
cDNA
(Sanger)
(ID:Location)		 007_K01.ab1: 44731-48501 , 024_G04.ab1: 47039-48497 , 025_P23.ab1: 47055-48490 , 033_A04.ab1: 47057-48495

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_022137_060 0.0 - - 1-acylglycerophosphocholine O-acyltransferase [Vernicia fordii]
2 Hb_006663_100 0.0728859196 - - hypothetical protein JCGZ_06980 [Jatropha curcas]
3 Hb_010120_030 0.0735864839 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
4 Hb_000120_800 0.0771420267 - - PREDICTED: rab proteins geranylgeranyltransferase component A [Jatropha curcas]
5 Hb_000359_170 0.079220613 - - hypothetical protein CISIN_1g014750mg [Citrus sinensis]
6 Hb_000009_170 0.0792643209 - - dolichyl-diphosphooligosaccharide--protein glycosyltransferase, putative [Ricinus communis]
7 Hb_012760_170 0.0799287885 - - PREDICTED: la-related protein 1C-like isoform X1 [Jatropha curcas]
8 Hb_000012_090 0.0804521903 - - 3'-5' exonuclease, putative [Ricinus communis]
9 Hb_005063_040 0.0808766303 - - PREDICTED: E3 ubiquitin protein ligase DRIP2-like isoform X1 [Jatropha curcas]
10 Hb_002014_080 0.0817276035 - - PREDICTED: tankyrase-1 isoform X4 [Jatropha curcas]
11 Hb_003602_040 0.0833131627 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
12 Hb_000179_170 0.0848114861 - - PREDICTED: protein bem46 isoform X1 [Jatropha curcas]
13 Hb_076787_010 0.08887618 - - PREDICTED: phospholipase SGR2 isoform X2 [Jatropha curcas]
14 Hb_000529_160 0.0902390043 - - PREDICTED: uncharacterized protein At1g04910 [Populus euphratica]
15 Hb_033491_010 0.0914730577 - - Phosphatidylinositol N-acetylglucosaminyltransferase subunit C, putative [Ricinus communis]
16 Hb_000134_090 0.0921478847 - - PREDICTED: chaperone protein dnaJ 1, mitochondrial [Jatropha curcas]
17 Hb_003656_130 0.0929142576 - - PREDICTED: protein bem46 isoform X2 [Jatropha curcas]
18 Hb_002400_220 0.0938195332 - - Vesicle-associated membrane protein, putative [Ricinus communis]
19 Hb_000120_500 0.0943136122 - - PREDICTED: AT-hook motif nuclear-localized protein 10-like [Jatropha curcas]
20 Hb_001124_210 0.0954569997 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_022137_060 Hb_022137_060 Hb_006663_100 Hb_006663_100 Hb_022137_060--Hb_006663_100 Hb_010120_030 Hb_010120_030 Hb_022137_060--Hb_010120_030 Hb_000120_800 Hb_000120_800 Hb_022137_060--Hb_000120_800 Hb_000359_170 Hb_000359_170 Hb_022137_060--Hb_000359_170 Hb_000009_170 Hb_000009_170 Hb_022137_060--Hb_000009_170 Hb_012760_170 Hb_012760_170 Hb_022137_060--Hb_012760_170 Hb_003602_040 Hb_003602_040 Hb_006663_100--Hb_003602_040 Hb_007894_140 Hb_007894_140 Hb_006663_100--Hb_007894_140 Hb_006663_100--Hb_012760_170 Hb_007590_080 Hb_007590_080 Hb_006663_100--Hb_007590_080 Hb_001329_230 Hb_001329_230 Hb_006663_100--Hb_001329_230 Hb_003656_130 Hb_003656_130 Hb_010120_030--Hb_003656_130 Hb_000012_090 Hb_000012_090 Hb_010120_030--Hb_000012_090 Hb_000529_160 Hb_000529_160 Hb_010120_030--Hb_000529_160 Hb_000049_040 Hb_000049_040 Hb_010120_030--Hb_000049_040 Hb_000365_310 Hb_000365_310 Hb_010120_030--Hb_000365_310 Hb_001840_080 Hb_001840_080 Hb_000120_800--Hb_001840_080 Hb_005306_110 Hb_005306_110 Hb_000120_800--Hb_005306_110 Hb_001017_040 Hb_001017_040 Hb_000120_800--Hb_001017_040 Hb_000134_090 Hb_000134_090 Hb_000120_800--Hb_000134_090 Hb_000120_800--Hb_000009_170 Hb_008725_250 Hb_008725_250 Hb_000359_170--Hb_008725_250 Hb_002400_220 Hb_002400_220 Hb_000359_170--Hb_002400_220 Hb_005754_020 Hb_005754_020 Hb_000359_170--Hb_005754_020 Hb_033491_010 Hb_033491_010 Hb_000359_170--Hb_033491_010 Hb_000359_170--Hb_005306_110 Hb_001001_060 Hb_001001_060 Hb_000009_170--Hb_001001_060 Hb_000620_010 Hb_000620_010 Hb_000009_170--Hb_000620_010 Hb_009838_100 Hb_009838_100 Hb_000009_170--Hb_009838_100 Hb_000331_210 Hb_000331_210 Hb_000009_170--Hb_000331_210 Hb_012760_170--Hb_003602_040 Hb_000184_110 Hb_000184_110 Hb_012760_170--Hb_000184_110 Hb_012760_170--Hb_000120_800 Hb_012760_170--Hb_001017_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
95.5225 24.7609 15.542 34.7176 79.8351 105.405
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
108.308 41.0836 64.7132 32.9465 16.537

CAGE analysis