Hb_022167_010

Information

Type -
Description -
Location Contig22167: 110-1123
Sequence    

Annotation

kegg
ID pop:POPTR_0017s04230g
description POPTRDRAFT_258031; hypothetical protein
nr
ID XP_007038999.1
description Kinase, putative isoform 2 [Theobroma cacao]
swissprot
ID D7SFH9
description Glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2 OS=Arabidopsis thaliana GN=GDPDL2 PE=1 SV=1
trembl
ID A0A061G0W2
description Kinase, putative isoform 2 OS=Theobroma cacao GN=TCM_015370 PE=3 SV=1
Gene Ontology
ID GO:0004672
description probable receptor-like protein kinase at5g39020

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_022167_010 0.0 - - Kinase, putative isoform 2 [Theobroma cacao]
2 Hb_000928_100 0.0409250793 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
3 Hb_000236_130 0.0618959553 - - PREDICTED: protein ECERIFERUM 26 [Jatropha curcas]
4 Hb_179129_010 0.0661884237 - - hypothetical protein POPTR_0018s10470g [Populus trichocarpa]
5 Hb_000692_060 0.0677506207 - - calcium-dependent protein kinase, putative [Ricinus communis]
6 Hb_033834_020 0.0720695365 - - conserved hypothetical protein [Ricinus communis]
7 Hb_004346_050 0.0728284509 - - PREDICTED: ABC transporter G family member 22 [Jatropha curcas]
8 Hb_000749_140 0.0754584007 - - PREDICTED: 2-succinylbenzoate--CoA ligase, chloroplastic/peroxisomal [Jatropha curcas]
9 Hb_078954_030 0.0758800786 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000294_020 0.0764559941 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD11 [Jatropha curcas]
11 Hb_003777_090 0.0768753123 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-2-like [Jatropha curcas]
12 Hb_000386_010 0.0781005909 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002805_200 0.0831227147 - - PREDICTED: serine--glyoxylate aminotransferase [Nelumbo nucifera]
14 Hb_007254_010 0.0842452948 - - hypothetical protein JCGZ_25214 [Jatropha curcas]
15 Hb_000282_020 0.0845799069 transcription factor TF Family: MYB-related conserved hypothetical protein [Ricinus communis]
16 Hb_000340_280 0.0858418754 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000188_070 0.0887503195 - - calcineurin-like phosphoesterase [Manihot esculenta]
18 Hb_016371_010 0.0891125061 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Jatropha curcas]
19 Hb_092516_010 0.0895060196 - - hypothetical protein JCGZ_12248 [Jatropha curcas]
20 Hb_001233_050 0.0895610856 - - Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplast precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_022167_010 Hb_022167_010 Hb_000928_100 Hb_000928_100 Hb_022167_010--Hb_000928_100 Hb_000236_130 Hb_000236_130 Hb_022167_010--Hb_000236_130 Hb_179129_010 Hb_179129_010 Hb_022167_010--Hb_179129_010 Hb_000692_060 Hb_000692_060 Hb_022167_010--Hb_000692_060 Hb_033834_020 Hb_033834_020 Hb_022167_010--Hb_033834_020 Hb_004346_050 Hb_004346_050 Hb_022167_010--Hb_004346_050 Hb_000386_010 Hb_000386_010 Hb_000928_100--Hb_000386_010 Hb_000749_140 Hb_000749_140 Hb_000928_100--Hb_000749_140 Hb_000294_020 Hb_000294_020 Hb_000928_100--Hb_000294_020 Hb_000928_100--Hb_033834_020 Hb_001916_110 Hb_001916_110 Hb_000928_100--Hb_001916_110 Hb_000236_130--Hb_000692_060 Hb_000890_170 Hb_000890_170 Hb_000236_130--Hb_000890_170 Hb_003777_090 Hb_003777_090 Hb_000236_130--Hb_003777_090 Hb_000236_130--Hb_000294_020 Hb_000236_130--Hb_179129_010 Hb_179129_010--Hb_004346_050 Hb_016371_010 Hb_016371_010 Hb_179129_010--Hb_016371_010 Hb_078954_030 Hb_078954_030 Hb_179129_010--Hb_078954_030 Hb_001424_010 Hb_001424_010 Hb_179129_010--Hb_001424_010 Hb_000025_700 Hb_000025_700 Hb_179129_010--Hb_000025_700 Hb_000530_040 Hb_000530_040 Hb_179129_010--Hb_000530_040 Hb_000188_070 Hb_000188_070 Hb_000692_060--Hb_000188_070 Hb_007254_010 Hb_007254_010 Hb_000692_060--Hb_007254_010 Hb_000692_060--Hb_033834_020 Hb_001958_030 Hb_001958_030 Hb_000692_060--Hb_001958_030 Hb_033834_020--Hb_000188_070 Hb_033834_020--Hb_007254_010 Hb_033834_020--Hb_001958_030 Hb_004346_050--Hb_016371_010 Hb_004346_050--Hb_078954_030 Hb_004346_050--Hb_000025_700 Hb_004346_050--Hb_001424_010 Hb_048141_050 Hb_048141_050 Hb_004346_050--Hb_048141_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.377555 3.81125 0.745345 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0787422 2.24616

CAGE analysis