Hb_022174_010

Information

Type -
Description -
Location Contig22174: 1837-2900
Sequence    

Annotation

kegg
ID pop:POPTR_0002s15700g
description POPTRDRAFT_411736; C2 domain-containing family protein
nr
ID AEH05973.1
description elicitor-responsive protein [Hevea brasiliensis]
swissprot
ID Q9C8S6
description C2 domain-containing protein At1g63220 OS=Arabidopsis thaliana GN=At1g63220 PE=1 SV=1
trembl
ID F8SKC5
description Elicitor-responsive protein OS=Hevea brasiliensis GN=ERP PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22970: 1701-2899 , PASA_asmbl_22971: 2614-2904
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_022174_010 0.0 - - elicitor-responsive protein [Hevea brasiliensis]
2 Hb_000258_150 0.181846249 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 11-like [Jatropha curcas]
3 Hb_013399_080 0.2019240492 - - PREDICTED: protein Brevis radix-like 2 [Jatropha curcas]
4 Hb_000069_670 0.2099345147 - - PREDICTED: uncharacterized protein LOC105642887 [Jatropha curcas]
5 Hb_000096_080 0.2189785255 - - PREDICTED: putative glycosyltransferase 7 [Jatropha curcas]
6 Hb_145655_010 0.240959296 - - PREDICTED: lactoylglutathione lyase [Jatropha curcas]
7 Hb_000207_100 0.2466945583 - - PREDICTED: ABC transporter G family member 25 [Jatropha curcas]
8 Hb_000943_030 0.2480608188 - - conserved hypothetical protein [Ricinus communis]
9 Hb_011671_080 0.2484034396 - - PREDICTED: leucine-rich repeat receptor-like protein kinase TDR [Jatropha curcas]
10 Hb_000424_080 0.2487990415 - - PREDICTED: endoglucanase 16 [Jatropha curcas]
11 Hb_000170_250 0.2532923812 - - hypothetical protein F775_29828 [Aegilops tauschii]
12 Hb_000554_010 0.2560656792 - - transporter, putative [Ricinus communis]
13 Hb_000397_100 0.2589504337 - - hypothetical protein 31 [Hevea brasiliensis]
14 Hb_000343_140 0.2653253622 - - PREDICTED: uncharacterized protein LOC105634966 [Jatropha curcas]
15 Hb_000098_020 0.2667575864 transcription factor TF Family: GRAS GRAS family transcription factor family protein [Theobroma cacao]
16 Hb_001377_280 0.2675036805 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 1 [Populus euphratica]
17 Hb_004007_160 0.2677415949 - - PREDICTED: formin-like protein 6 [Jatropha curcas]
18 Hb_003654_010 0.2698770794 - - PREDICTED: probable polygalacturonase non-catalytic subunit JP650 [Jatropha curcas]
19 Hb_002615_040 0.2730577599 - - PREDICTED: uncharacterized protein LOC105110770 [Populus euphratica]
20 Hb_010560_060 0.2772099268 - - PREDICTED: serine/threonine-protein kinase HT1 [Jatropha curcas]

Gene co-expression network

sample Hb_022174_010 Hb_022174_010 Hb_000258_150 Hb_000258_150 Hb_022174_010--Hb_000258_150 Hb_013399_080 Hb_013399_080 Hb_022174_010--Hb_013399_080 Hb_000069_670 Hb_000069_670 Hb_022174_010--Hb_000069_670 Hb_000096_080 Hb_000096_080 Hb_022174_010--Hb_000096_080 Hb_145655_010 Hb_145655_010 Hb_022174_010--Hb_145655_010 Hb_000207_100 Hb_000207_100 Hb_022174_010--Hb_000207_100 Hb_010560_060 Hb_010560_060 Hb_000258_150--Hb_010560_060 Hb_003654_010 Hb_003654_010 Hb_000258_150--Hb_003654_010 Hb_000365_260 Hb_000365_260 Hb_000258_150--Hb_000365_260 Hb_004007_160 Hb_004007_160 Hb_000258_150--Hb_004007_160 Hb_000098_020 Hb_000098_020 Hb_000258_150--Hb_000098_020 Hb_000397_120 Hb_000397_120 Hb_013399_080--Hb_000397_120 Hb_013399_080--Hb_000096_080 Hb_000069_710 Hb_000069_710 Hb_013399_080--Hb_000069_710 Hb_013399_080--Hb_000207_100 Hb_000943_030 Hb_000943_030 Hb_013399_080--Hb_000943_030 Hb_054132_010 Hb_054132_010 Hb_000069_670--Hb_054132_010 Hb_000138_170 Hb_000138_170 Hb_000069_670--Hb_000138_170 Hb_000243_080 Hb_000243_080 Hb_000069_670--Hb_000243_080 Hb_000554_010 Hb_000554_010 Hb_000069_670--Hb_000554_010 Hb_001439_200 Hb_001439_200 Hb_000069_670--Hb_001439_200 Hb_000826_090 Hb_000826_090 Hb_000069_670--Hb_000826_090 Hb_000556_150 Hb_000556_150 Hb_000096_080--Hb_000556_150 Hb_004375_130 Hb_004375_130 Hb_000096_080--Hb_004375_130 Hb_000096_080--Hb_000207_100 Hb_002078_160 Hb_002078_160 Hb_000096_080--Hb_002078_160 Hb_007904_210 Hb_007904_210 Hb_000096_080--Hb_007904_210 Hb_000096_080--Hb_000554_010 Hb_005539_370 Hb_005539_370 Hb_145655_010--Hb_005539_370 Hb_000424_080 Hb_000424_080 Hb_145655_010--Hb_000424_080 Hb_000174_050 Hb_000174_050 Hb_145655_010--Hb_000174_050 Hb_000522_140 Hb_000522_140 Hb_145655_010--Hb_000522_140 Hb_004225_110 Hb_004225_110 Hb_145655_010--Hb_004225_110 Hb_001318_200 Hb_001318_200 Hb_000207_100--Hb_001318_200 Hb_000281_110 Hb_000281_110 Hb_000207_100--Hb_000281_110 Hb_000207_100--Hb_000554_010 Hb_000207_100--Hb_002078_160 Hb_000207_100--Hb_000556_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6035.04 181.56 980.604 5280.49 1023.98 1394.08
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
750.586 660.339 2797.55 200.295 801.67

CAGE analysis