Hb_022181_030

Information

Type -
Description -
Location Contig22181: 18513-22678
Sequence    

Annotation

kegg
ID rcu:RCOM_1012850
description hypothetical protein
nr
ID XP_012091705.1
description PREDICTED: uncharacterized protein LOC105649615 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JB56
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21512 PE=4 SV=1
Gene Ontology
ID GO:0006261
description negative regulator of systemic acquired isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22988: 17807-18543 , PASA_asmbl_22989: 18645-21038 , PASA_asmbl_22990: 21194-22652
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_022181_030 0.0 - - PREDICTED: uncharacterized protein LOC105649615 isoform X2 [Jatropha curcas]
2 Hb_001357_150 0.0818750401 - - hypothetical protein POPTR_0011s08930g [Populus trichocarpa]
3 Hb_007451_010 0.0842446226 - - PREDICTED: 60S ribosome subunit biogenesis protein NIP7 homolog [Jatropha curcas]
4 Hb_022132_050 0.0894333723 - - GTP binding protein, putative [Ricinus communis]
5 Hb_001123_030 0.0986122789 - - ABC transporter family protein [Hevea brasiliensis]
6 Hb_002119_080 0.1008162595 - - PREDICTED: 54S ribosomal protein L24, mitochondrial [Jatropha curcas]
7 Hb_006588_070 0.1016073975 - - 20 kD nuclear cap binding protein, putative [Ricinus communis]
8 Hb_000220_010 0.102985769 - - PREDICTED: uncharacterized protein LOC105630083 [Jatropha curcas]
9 Hb_011909_120 0.1037822288 - - Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis]
10 Hb_005730_120 0.1037946719 - - PREDICTED: protein WHI4 [Jatropha curcas]
11 Hb_000487_210 0.1044239629 - - PREDICTED: uncharacterized protein LOC105641929 [Jatropha curcas]
12 Hb_001025_110 0.1057490919 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000731_220 0.1059055046 - - PREDICTED: derlin-2.2 [Jatropha curcas]
14 Hb_001902_130 0.1072631768 - - 60S ribosomal protein L36-2 [Morus notabilis]
15 Hb_004122_040 0.1079495534 - - PREDICTED: polyadenylate-binding protein 2-like [Jatropha curcas]
16 Hb_033834_030 0.1084748857 - - PREDICTED: nucleolar complex protein 2 homolog isoform X1 [Jatropha curcas]
17 Hb_000207_150 0.1115918668 - - PREDICTED: uncharacterized membrane protein At4g09580 [Jatropha curcas]
18 Hb_000107_190 0.1120979162 - - 50S ribosomal protein L20 [Hevea brasiliensis]
19 Hb_002296_050 0.1123109446 - - hypothetical protein AMTR_s00001p00247600 [Amborella trichopoda]
20 Hb_002820_050 0.1125493788 - - PREDICTED: putative glutathione-specific gamma-glutamylcyclotransferase 2 [Jatropha curcas]

Gene co-expression network

sample Hb_022181_030 Hb_022181_030 Hb_001357_150 Hb_001357_150 Hb_022181_030--Hb_001357_150 Hb_007451_010 Hb_007451_010 Hb_022181_030--Hb_007451_010 Hb_022132_050 Hb_022132_050 Hb_022181_030--Hb_022132_050 Hb_001123_030 Hb_001123_030 Hb_022181_030--Hb_001123_030 Hb_002119_080 Hb_002119_080 Hb_022181_030--Hb_002119_080 Hb_006588_070 Hb_006588_070 Hb_022181_030--Hb_006588_070 Hb_001357_150--Hb_007451_010 Hb_000220_010 Hb_000220_010 Hb_001357_150--Hb_000220_010 Hb_005730_120 Hb_005730_120 Hb_001357_150--Hb_005730_120 Hb_001599_040 Hb_001599_040 Hb_001357_150--Hb_001599_040 Hb_013738_020 Hb_013738_020 Hb_001357_150--Hb_013738_020 Hb_172632_120 Hb_172632_120 Hb_001357_150--Hb_172632_120 Hb_007451_010--Hb_000220_010 Hb_156635_010 Hb_156635_010 Hb_007451_010--Hb_156635_010 Hb_002740_030 Hb_002740_030 Hb_007451_010--Hb_002740_030 Hb_001142_030 Hb_001142_030 Hb_007451_010--Hb_001142_030 Hb_073973_130 Hb_073973_130 Hb_022132_050--Hb_073973_130 Hb_002872_030 Hb_002872_030 Hb_022132_050--Hb_002872_030 Hb_000392_230 Hb_000392_230 Hb_022132_050--Hb_000392_230 Hb_022132_050--Hb_006588_070 Hb_000649_230 Hb_000649_230 Hb_022132_050--Hb_000649_230 Hb_027428_010 Hb_027428_010 Hb_022132_050--Hb_027428_010 Hb_000302_310 Hb_000302_310 Hb_001123_030--Hb_000302_310 Hb_000261_230 Hb_000261_230 Hb_001123_030--Hb_000261_230 Hb_001214_060 Hb_001214_060 Hb_001123_030--Hb_001214_060 Hb_011909_120 Hb_011909_120 Hb_001123_030--Hb_011909_120 Hb_000126_010 Hb_000126_010 Hb_001123_030--Hb_000126_010 Hb_004122_040 Hb_004122_040 Hb_002119_080--Hb_004122_040 Hb_000331_060 Hb_000331_060 Hb_002119_080--Hb_000331_060 Hb_002119_080--Hb_073973_130 Hb_001186_090 Hb_001186_090 Hb_002119_080--Hb_001186_090 Hb_000107_190 Hb_000107_190 Hb_002119_080--Hb_000107_190 Hb_002119_080--Hb_022132_050 Hb_006588_070--Hb_002872_030 Hb_000776_100 Hb_000776_100 Hb_006588_070--Hb_000776_100 Hb_006588_070--Hb_027428_010 Hb_001051_080 Hb_001051_080 Hb_006588_070--Hb_001051_080 Hb_000096_120 Hb_000096_120 Hb_006588_070--Hb_000096_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.31716 3.68901 5.43126 5.6377 3.6648 6.76437
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.63617 6.74354 1.32805 3.21805 2.35463

CAGE analysis