Hb_022206_030

Information

Type -
Description -
Location Contig22206: 13109-15018
Sequence    

Annotation

kegg
ID rcu:RCOM_0495210
description Auxin-induced in root cultures protein 12 precursor, putative
nr
ID XP_002532004.1
description Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]
swissprot
ID Q9FGK4
description Cytochrome b561 and DOMON domain-containing protein At5g47530 OS=Arabidopsis thaliana GN=At5g47530 PE=2 SV=1
trembl
ID B9T181
description Auxin-induced in root cultures protein 12, putative OS=Ricinus communis GN=RCOM_0495210 PE=4 SV=1
Gene Ontology
ID GO:0016021
description cytochrome b561 and domon domain-containing protein at5g47530-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22994: 14664-14837
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_022206_030 0.0 - - Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]
2 Hb_009083_010 0.081040164 - - Phytosulfokines 3 precursor family protein [Populus trichocarpa]
3 Hb_174380_010 0.121111167 - - kinase, putative [Ricinus communis]
4 Hb_117127_010 0.1237385537 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH106 [Jatropha curcas]
5 Hb_000133_060 0.1280887099 - - PREDICTED: protein YLS9-like [Jatropha curcas]
6 Hb_041145_010 0.1360164255 - - hypothetical protein CISIN_1g021653mg [Citrus sinensis]
7 Hb_009510_050 0.1363760146 - - conserved hypothetical protein [Ricinus communis]
8 Hb_006634_080 0.1386633431 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-3b [Jatropha curcas]
9 Hb_003602_090 0.139618411 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA9-like [Jatropha curcas]
10 Hb_002410_010 0.1425628532 - - PREDICTED: probable mitochondrial chaperone BCS1-A [Jatropha curcas]
11 Hb_060237_010 0.1427580689 - - conserved hypothetical protein [Ricinus communis]
12 Hb_133845_010 0.1451224148 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
13 Hb_029866_050 0.1471849373 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor CRF4 [Jatropha curcas]
14 Hb_001568_120 0.1472971874 - - hypothetical protein JCGZ_05918 [Jatropha curcas]
15 Hb_127400_010 0.1501291389 desease resistance Gene Name: NB-ARC phosphoprotein phosphatase, putative [Ricinus communis]
16 Hb_006615_180 0.1524370556 - - hypothetical protein B456_003G103400 [Gossypium raimondii]
17 Hb_002239_030 0.1524958662 transcription factor TF Family: ARF PREDICTED: auxin response factor 4 [Jatropha curcas]
18 Hb_005000_200 0.1537354613 - - PREDICTED: uncharacterized protein LOC105637887 [Jatropha curcas]
19 Hb_000003_420 0.154004793 - - o-methyltransferase, putative [Ricinus communis]
20 Hb_000098_250 0.1552666027 - - UDP-glucose flavonoid 3-O-glucosyltransferase [Medicago truncatula]

Gene co-expression network

sample Hb_022206_030 Hb_022206_030 Hb_009083_010 Hb_009083_010 Hb_022206_030--Hb_009083_010 Hb_174380_010 Hb_174380_010 Hb_022206_030--Hb_174380_010 Hb_117127_010 Hb_117127_010 Hb_022206_030--Hb_117127_010 Hb_000133_060 Hb_000133_060 Hb_022206_030--Hb_000133_060 Hb_041145_010 Hb_041145_010 Hb_022206_030--Hb_041145_010 Hb_009510_050 Hb_009510_050 Hb_022206_030--Hb_009510_050 Hb_009083_010--Hb_174380_010 Hb_006634_080 Hb_006634_080 Hb_009083_010--Hb_006634_080 Hb_005357_270 Hb_005357_270 Hb_009083_010--Hb_005357_270 Hb_009083_010--Hb_000133_060 Hb_000252_080 Hb_000252_080 Hb_009083_010--Hb_000252_080 Hb_174380_010--Hb_006634_080 Hb_174380_010--Hb_117127_010 Hb_000338_030 Hb_000338_030 Hb_174380_010--Hb_000338_030 Hb_174380_010--Hb_000133_060 Hb_012545_080 Hb_012545_080 Hb_174380_010--Hb_012545_080 Hb_000098_250 Hb_000098_250 Hb_117127_010--Hb_000098_250 Hb_008667_030 Hb_008667_030 Hb_117127_010--Hb_008667_030 Hb_002410_010 Hb_002410_010 Hb_117127_010--Hb_002410_010 Hb_002529_080 Hb_002529_080 Hb_117127_010--Hb_002529_080 Hb_006615_180 Hb_006615_180 Hb_117127_010--Hb_006615_180 Hb_000000_070 Hb_000000_070 Hb_117127_010--Hb_000000_070 Hb_007407_010 Hb_007407_010 Hb_000133_060--Hb_007407_010 Hb_002205_260 Hb_002205_260 Hb_000133_060--Hb_002205_260 Hb_000110_330 Hb_000110_330 Hb_000133_060--Hb_000110_330 Hb_000133_060--Hb_012545_080 Hb_019961_010 Hb_019961_010 Hb_000133_060--Hb_019961_010 Hb_041145_010--Hb_000110_330 Hb_041145_010--Hb_117127_010 Hb_001568_120 Hb_001568_120 Hb_041145_010--Hb_001568_120 Hb_133845_010 Hb_133845_010 Hb_041145_010--Hb_133845_010 Hb_003602_090 Hb_003602_090 Hb_041145_010--Hb_003602_090 Hb_127400_010 Hb_127400_010 Hb_041145_010--Hb_127400_010 Hb_009510_050--Hb_003602_090 Hb_009510_050--Hb_006615_180 Hb_082870_010 Hb_082870_010 Hb_009510_050--Hb_082870_010 Hb_009510_050--Hb_117127_010 Hb_000723_060 Hb_000723_060 Hb_009510_050--Hb_000723_060 Hb_017604_020 Hb_017604_020 Hb_009510_050--Hb_017604_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.068016 20.1664 4.34538 7.21389 0.0786424 0.0410975
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.249258 0.514758 0.0921144 5.05836 0.358997

CAGE analysis