Hb_022212_010

Information

Type -
Description -
Location Contig22212: 2-635
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_022212_010 0.0 - - -
2 Hb_153231_040 0.1436860466 - - -
3 Hb_076693_010 0.2454207413 - - PREDICTED: beta-glucosidase 11-like isoform X2 [Jatropha curcas]
4 Hb_011707_010 0.2454209497 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
5 Hb_092027_010 0.2454210218 - - PREDICTED: uncharacterized protein LOC105761643 [Gossypium raimondii]
6 Hb_008031_020 0.2488692503 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
7 Hb_001831_020 0.2489519319 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
8 Hb_000058_220 0.2491105044 - - hypothetical protein, partial [Staphylococcus aureus]
9 Hb_019677_010 0.2491646028 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
10 Hb_048125_010 0.2497560706 - - PREDICTED: uncharacterized protein LOC104104928 [Nicotiana tomentosiformis]
11 Hb_012522_020 0.2502614759 - - -
12 Hb_010504_010 0.2589706618 - - 40S ribosomal protein S15C [Hevea brasiliensis]
13 Hb_011037_010 0.2630083256 - - PREDICTED: uncharacterized protein LOC105778976 [Gossypium raimondii]
14 Hb_003058_050 0.2634217824 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
15 Hb_002099_020 0.2640552043 - - cysteine proteinase inhibitor-like [Jatropha curcas]
16 Hb_007713_020 0.2669888638 - - -
17 Hb_001863_060 0.2822610296 - - PIF-like transposase [Daucus carota]
18 Hb_000205_170 0.2834501052 - - PREDICTED: uncharacterized protein LOC103926801 [Pyrus x bretschneideri]
19 Hb_002239_010 0.2939535698 - - -
20 Hb_000350_110 0.3099060202 - - PREDICTED: uncharacterized protein LOC104220461 isoform X2 [Nicotiana sylvestris]

Gene co-expression network

sample Hb_022212_010 Hb_022212_010 Hb_153231_040 Hb_153231_040 Hb_022212_010--Hb_153231_040 Hb_076693_010 Hb_076693_010 Hb_022212_010--Hb_076693_010 Hb_011707_010 Hb_011707_010 Hb_022212_010--Hb_011707_010 Hb_092027_010 Hb_092027_010 Hb_022212_010--Hb_092027_010 Hb_008031_020 Hb_008031_020 Hb_022212_010--Hb_008031_020 Hb_001831_020 Hb_001831_020 Hb_022212_010--Hb_001831_020 Hb_010504_010 Hb_010504_010 Hb_153231_040--Hb_010504_010 Hb_002239_010 Hb_002239_010 Hb_153231_040--Hb_002239_010 Hb_000350_110 Hb_000350_110 Hb_153231_040--Hb_000350_110 Hb_001863_060 Hb_001863_060 Hb_153231_040--Hb_001863_060 Hb_007792_010 Hb_007792_010 Hb_153231_040--Hb_007792_010 Hb_076693_010--Hb_011707_010 Hb_076693_010--Hb_092027_010 Hb_076693_010--Hb_008031_020 Hb_076693_010--Hb_001831_020 Hb_000058_220 Hb_000058_220 Hb_076693_010--Hb_000058_220 Hb_019677_010 Hb_019677_010 Hb_076693_010--Hb_019677_010 Hb_011707_010--Hb_092027_010 Hb_011707_010--Hb_008031_020 Hb_011707_010--Hb_001831_020 Hb_011707_010--Hb_000058_220 Hb_011707_010--Hb_019677_010 Hb_092027_010--Hb_008031_020 Hb_092027_010--Hb_001831_020 Hb_092027_010--Hb_000058_220 Hb_092027_010--Hb_019677_010 Hb_008031_020--Hb_001831_020 Hb_008031_020--Hb_000058_220 Hb_008031_020--Hb_019677_010 Hb_048125_010 Hb_048125_010 Hb_008031_020--Hb_048125_010 Hb_012522_020 Hb_012522_020 Hb_008031_020--Hb_012522_020 Hb_001831_020--Hb_000058_220 Hb_001831_020--Hb_019677_010 Hb_001831_020--Hb_048125_010 Hb_001831_020--Hb_012522_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.125298 0 0 0 0.046233 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.229222 0 0 0 0

CAGE analysis