Hb_022250_010

Information

Type -
Description -
Location Contig22250: 14759-18133
Sequence    

Annotation

kegg
ID rcu:RCOM_1503220
description catalytic, putative
nr
ID XP_012090559.1
description PREDICTED: probable beta-1,4-xylosyltransferase IRX10L [Jatropha curcas]
swissprot
ID Q940Q8
description Probable beta-1,4-xylosyltransferase IRX10L OS=Arabidopsis thaliana GN=IRX10L PE=2 SV=1
trembl
ID E6NU04
description JHL07K02.4 protein OS=Jatropha curcas GN=JHL07K02.4 PE=4 SV=1
Gene Ontology
ID GO:0005768
description probable beta- -xylosyltransferase irx10l

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23025: 15006-18380
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_022250_010 0.0 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX10L [Jatropha curcas]
2 Hb_001876_040 0.0587052437 - - PREDICTED: mucin-5B [Jatropha curcas]
3 Hb_183086_030 0.0657861231 - - GTPase-activating protein GYP7 [Gossypium arboreum]
4 Hb_001157_230 0.0693332945 - - Protein AFR, putative [Ricinus communis]
5 Hb_001541_150 0.0779160462 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001029_040 0.0793681435 - - PREDICTED: uncharacterized protein LOC105641058 [Jatropha curcas]
7 Hb_000270_190 0.0795412608 transcription factor TF Family: DDT tRNA ligase, putative [Ricinus communis]
8 Hb_033642_060 0.0810685216 - - PREDICTED: protein CHUP1, chloroplastic [Jatropha curcas]
9 Hb_008014_040 0.0813758371 - - PREDICTED: uncharacterized protein LOC105649721 [Jatropha curcas]
10 Hb_001329_250 0.0841848 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105642692 isoform X1 [Jatropha curcas]
11 Hb_006970_020 0.0851866671 - - PREDICTED: DNA topoisomerase 6 subunit B [Jatropha curcas]
12 Hb_001801_020 0.0862367267 - - PREDICTED: xylosyltransferase 1 [Jatropha curcas]
13 Hb_001301_270 0.0865247305 - - PREDICTED: heat shock 70 kDa protein 16 [Jatropha curcas]
14 Hb_000862_100 0.0866828783 - - PREDICTED: plastid division protein CDP1, chloroplastic [Jatropha curcas]
15 Hb_006663_060 0.088085128 - - PREDICTED: calcium homeostasis endoplasmic reticulum protein [Jatropha curcas]
16 Hb_032202_220 0.0886642631 - - ring finger protein, putative [Ricinus communis]
17 Hb_005914_040 0.0892348568 - - o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis]
18 Hb_005214_140 0.0904697717 - - PREDICTED: transcription factor GTE2-like [Jatropha curcas]
19 Hb_000212_420 0.0913147327 - - PREDICTED: probable protein phosphatase 2C 33 [Jatropha curcas]
20 Hb_008511_020 0.091523741 - - PREDICTED: coatomer subunit gamma-2 [Jatropha curcas]

Gene co-expression network

sample Hb_022250_010 Hb_022250_010 Hb_001876_040 Hb_001876_040 Hb_022250_010--Hb_001876_040 Hb_183086_030 Hb_183086_030 Hb_022250_010--Hb_183086_030 Hb_001157_230 Hb_001157_230 Hb_022250_010--Hb_001157_230 Hb_001541_150 Hb_001541_150 Hb_022250_010--Hb_001541_150 Hb_001029_040 Hb_001029_040 Hb_022250_010--Hb_001029_040 Hb_000270_190 Hb_000270_190 Hb_022250_010--Hb_000270_190 Hb_001876_040--Hb_001157_230 Hb_000212_120 Hb_000212_120 Hb_001876_040--Hb_000212_120 Hb_032202_220 Hb_032202_220 Hb_001876_040--Hb_032202_220 Hb_024184_010 Hb_024184_010 Hb_001876_040--Hb_024184_010 Hb_002027_080 Hb_002027_080 Hb_001876_040--Hb_002027_080 Hb_033642_060 Hb_033642_060 Hb_183086_030--Hb_033642_060 Hb_001801_020 Hb_001801_020 Hb_183086_030--Hb_001801_020 Hb_000359_190 Hb_000359_190 Hb_183086_030--Hb_000359_190 Hb_000922_060 Hb_000922_060 Hb_183086_030--Hb_000922_060 Hb_001246_130 Hb_001246_130 Hb_183086_030--Hb_001246_130 Hb_001157_230--Hb_000212_120 Hb_001157_230--Hb_032202_220 Hb_001157_230--Hb_024184_010 Hb_001157_230--Hb_001029_040 Hb_000300_030 Hb_000300_030 Hb_001541_150--Hb_000300_030 Hb_004531_100 Hb_004531_100 Hb_001541_150--Hb_004531_100 Hb_006663_060 Hb_006663_060 Hb_001541_150--Hb_006663_060 Hb_001541_150--Hb_000270_190 Hb_000336_020 Hb_000336_020 Hb_001541_150--Hb_000336_020 Hb_001627_040 Hb_001627_040 Hb_001029_040--Hb_001627_040 Hb_007545_010 Hb_007545_010 Hb_001029_040--Hb_007545_010 Hb_003746_010 Hb_003746_010 Hb_001029_040--Hb_003746_010 Hb_138585_080 Hb_138585_080 Hb_001029_040--Hb_138585_080 Hb_000773_040 Hb_000773_040 Hb_000270_190--Hb_000773_040 Hb_073171_070 Hb_073171_070 Hb_000270_190--Hb_073171_070 Hb_005214_140 Hb_005214_140 Hb_000270_190--Hb_005214_140 Hb_003040_050 Hb_003040_050 Hb_000270_190--Hb_003040_050 Hb_004324_360 Hb_004324_360 Hb_000270_190--Hb_004324_360 Hb_001329_250 Hb_001329_250 Hb_000270_190--Hb_001329_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.0833 8.87588 10.1376 15.8725 7.1668 6.84914
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.60596 4.32874 5.92822 7.59435 17.5009

CAGE analysis