Hb_022250_040

Information

Type -
Description -
Location Contig22250: 34459-36082
Sequence    

Annotation

kegg
ID rcu:RCOM_1503190
description hypothetical protein
nr
ID XP_012090569.1
description PREDICTED: succinate dehydrogenase assembly factor 2, mitochondrial [Jatropha curcas]
swissprot
ID Q9FI44
description Succinate dehydrogenase assembly factor 2, mitochondrial OS=Arabidopsis thaliana GN=SDHAF2 PE=1 SV=1
trembl
ID E6NU08
description JHL07K02.8 protein OS=Jatropha curcas GN=JHL07K02.8 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23028: 34233-35966
cDNA
(Sanger)
(ID:Location)		 006_M10.ab1: 34312-35822 , 023_E22.ab1: 34446-35966 , 037_P02.ab1: 34398-35833 , 043_L10.ab1: 34291-35838 , 045_C08.ab1: 34411-35794

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_022250_040 0.0 - - PREDICTED: succinate dehydrogenase assembly factor 2, mitochondrial [Jatropha curcas]
2 Hb_009711_030 0.0413590159 - - PREDICTED: uncharacterized protein LOC105647792 isoform X1 [Jatropha curcas]
3 Hb_000371_080 0.0542415262 - - ubiquitin-conjugating enzyme m, putative [Ricinus communis]
4 Hb_002078_450 0.0607730358 - - nuclear transport factor, putative [Ricinus communis]
5 Hb_004662_030 0.0608516103 - - hypothetical protein PRUPE_ppa012487mg [Prunus persica]
6 Hb_002603_100 0.060929931 - - ATATH9, putative [Ricinus communis]
7 Hb_125000_010 0.063362341 - - PREDICTED: protein SCO1 homolog 2, mitochondrial [Jatropha curcas]
8 Hb_003540_040 0.0633670503 - - hypothetical protein JCGZ_20979 [Jatropha curcas]
9 Hb_001427_120 0.0645828846 - - PREDICTED: uncharacterized protein LOC105637787 [Jatropha curcas]
10 Hb_000956_010 0.065685135 - - PREDICTED: polyadenylate-binding protein 2-like [Jatropha curcas]
11 Hb_005686_110 0.0667369976 - - PREDICTED: putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2 [Populus euphratica]
12 Hb_011794_070 0.0667740881 - - PREDICTED: 60S ribosomal protein L36-2-like [Jatropha curcas]
13 Hb_000376_050 0.0670171783 - - polyadenylate-binding protein, putative [Ricinus communis]
14 Hb_006569_020 0.0672758998 - - hypothetical protein POPTR_0010s22990g [Populus trichocarpa]
15 Hb_002097_110 0.0673629504 - - ankyrin repeat-containing protein, putative [Ricinus communis]
16 Hb_001243_050 0.0690944765 - - PREDICTED: uncharacterized protein LOC105643776 [Jatropha curcas]
17 Hb_000975_290 0.0712150712 - - PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
18 Hb_001246_090 0.0712487893 - - PREDICTED: acyl carrier protein 1, mitochondrial [Jatropha curcas]
19 Hb_000703_140 0.0739475008 - - transcription initiation factor TFIID subunit 13-like [Jatropha curcas]
20 Hb_021650_030 0.0740655782 - - PREDICTED: uncharacterized protein LOC105642056 [Jatropha curcas]

Gene co-expression network

sample Hb_022250_040 Hb_022250_040 Hb_009711_030 Hb_009711_030 Hb_022250_040--Hb_009711_030 Hb_000371_080 Hb_000371_080 Hb_022250_040--Hb_000371_080 Hb_002078_450 Hb_002078_450 Hb_022250_040--Hb_002078_450 Hb_004662_030 Hb_004662_030 Hb_022250_040--Hb_004662_030 Hb_002603_100 Hb_002603_100 Hb_022250_040--Hb_002603_100 Hb_125000_010 Hb_125000_010 Hb_022250_040--Hb_125000_010 Hb_009711_030--Hb_125000_010 Hb_009711_030--Hb_000371_080 Hb_001008_060 Hb_001008_060 Hb_009711_030--Hb_001008_060 Hb_001824_070 Hb_001824_070 Hb_009711_030--Hb_001824_070 Hb_002097_110 Hb_002097_110 Hb_009711_030--Hb_002097_110 Hb_005686_110 Hb_005686_110 Hb_000371_080--Hb_005686_110 Hb_003020_230 Hb_003020_230 Hb_000371_080--Hb_003020_230 Hb_000371_080--Hb_001824_070 Hb_005997_010 Hb_005997_010 Hb_000371_080--Hb_005997_010 Hb_071736_020 Hb_071736_020 Hb_002078_450--Hb_071736_020 Hb_002078_450--Hb_005686_110 Hb_000086_570 Hb_000086_570 Hb_002078_450--Hb_000086_570 Hb_002078_450--Hb_009711_030 Hb_001718_100 Hb_001718_100 Hb_002078_450--Hb_001718_100 Hb_004662_030--Hb_002097_110 Hb_004662_030--Hb_009711_030 Hb_133271_020 Hb_133271_020 Hb_004662_030--Hb_133271_020 Hb_000376_050 Hb_000376_050 Hb_004662_030--Hb_000376_050 Hb_015001_020 Hb_015001_020 Hb_004662_030--Hb_015001_020 Hb_023386_080 Hb_023386_080 Hb_002603_100--Hb_023386_080 Hb_002603_100--Hb_000376_050 Hb_000956_010 Hb_000956_010 Hb_002603_100--Hb_000956_010 Hb_001243_050 Hb_001243_050 Hb_002603_100--Hb_001243_050 Hb_001671_020 Hb_001671_020 Hb_002603_100--Hb_001671_020 Hb_010436_070 Hb_010436_070 Hb_125000_010--Hb_010436_070 Hb_003540_040 Hb_003540_040 Hb_125000_010--Hb_003540_040 Hb_118419_020 Hb_118419_020 Hb_125000_010--Hb_118419_020 Hb_002411_170 Hb_002411_170 Hb_125000_010--Hb_002411_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
273.316 64.2275 66.499 80.0091 235.841 280.841
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
367.472 340.613 255.668 98.5423 33.7533

CAGE analysis