Hb_022250_050

Information

Type -
Description -
Location Contig22250: 37187-39016
Sequence    

Annotation

kegg
ID rcu:RCOM_1503170
description hypothetical protein
nr
ID XP_002511074.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RA49
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1503170 PE=4 SV=1
Gene Ontology
ID GO:0005773
description 19-like isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23030: 37189-39342
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_022250_050 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002553_170 0.0785120924 - - PREDICTED: early nodulin-75-like [Jatropha curcas]
3 Hb_001040_190 0.0792471481 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor B-2a-like [Jatropha curcas]
4 Hb_001930_060 0.0836231485 - - PREDICTED: cytochrome P450 71D9-like [Fragaria vesca subsp. vesca]
5 Hb_002835_020 0.0923172919 - - PREDICTED: cytochrome P450 71A1-like [Jatropha curcas]
6 Hb_001301_020 0.0926296593 - - hypothetical protein JCGZ_06575 [Jatropha curcas]
7 Hb_001140_330 0.0929880211 - - PREDICTED: uncharacterized protein LOC105142675 [Populus euphratica]
8 Hb_166232_010 0.0933674575 - - hypothetical protein JCGZ_22831 [Jatropha curcas]
9 Hb_000563_080 0.0935508881 - - -
10 Hb_003188_020 0.0951007246 - - chitinase, putative [Ricinus communis]
11 Hb_000388_160 0.0973336037 - - xyloglucan endo-1 family protein [Populus trichocarpa]
12 Hb_000446_100 0.0992956869 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
13 Hb_000828_030 0.0993449141 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
14 Hb_000141_070 0.0998639285 - - l-lactate dehydrogenase, putative [Ricinus communis]
15 Hb_000563_060 0.1001478175 - - PREDICTED: uncharacterized protein LOC100306381 isoform X1 [Glycine max]
16 Hb_003334_080 0.101340248 - - Reticuline oxidase precursor, putative [Ricinus communis]
17 Hb_012506_080 0.1021246484 - - amino acid transporter, putative [Ricinus communis]
18 Hb_009568_010 0.1021454353 - - hypothetical protein POPTR_0001s46700g [Populus trichocarpa]
19 Hb_005464_040 0.1025705812 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
20 Hb_153208_010 0.102715639 - - Cationic peroxidase 2 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_022250_050 Hb_022250_050 Hb_002553_170 Hb_002553_170 Hb_022250_050--Hb_002553_170 Hb_001040_190 Hb_001040_190 Hb_022250_050--Hb_001040_190 Hb_001930_060 Hb_001930_060 Hb_022250_050--Hb_001930_060 Hb_002835_020 Hb_002835_020 Hb_022250_050--Hb_002835_020 Hb_001301_020 Hb_001301_020 Hb_022250_050--Hb_001301_020 Hb_001140_330 Hb_001140_330 Hb_022250_050--Hb_001140_330 Hb_002553_170--Hb_001930_060 Hb_002553_170--Hb_002835_020 Hb_003334_080 Hb_003334_080 Hb_002553_170--Hb_003334_080 Hb_000563_060 Hb_000563_060 Hb_002553_170--Hb_000563_060 Hb_003188_020 Hb_003188_020 Hb_002553_170--Hb_003188_020 Hb_000141_070 Hb_000141_070 Hb_002553_170--Hb_000141_070 Hb_058620_040 Hb_058620_040 Hb_001040_190--Hb_058620_040 Hb_001040_190--Hb_002553_170 Hb_001040_190--Hb_003334_080 Hb_058620_050 Hb_058620_050 Hb_001040_190--Hb_058620_050 Hb_001040_190--Hb_000141_070 Hb_004693_010 Hb_004693_010 Hb_001040_190--Hb_004693_010 Hb_166232_010 Hb_166232_010 Hb_001930_060--Hb_166232_010 Hb_001930_060--Hb_002835_020 Hb_001930_060--Hb_003334_080 Hb_001930_060--Hb_001301_020 Hb_009568_010 Hb_009568_010 Hb_001930_060--Hb_009568_010 Hb_039363_010 Hb_039363_010 Hb_002835_020--Hb_039363_010 Hb_002835_020--Hb_000563_060 Hb_000388_160 Hb_000388_160 Hb_002835_020--Hb_000388_160 Hb_002835_020--Hb_003334_080 Hb_000563_080 Hb_000563_080 Hb_001301_020--Hb_000563_080 Hb_001301_020--Hb_003188_020 Hb_000446_100 Hb_000446_100 Hb_001301_020--Hb_000446_100 Hb_004254_070 Hb_004254_070 Hb_001301_020--Hb_004254_070 Hb_005464_040 Hb_005464_040 Hb_001301_020--Hb_005464_040 Hb_014034_020 Hb_014034_020 Hb_001301_020--Hb_014034_020 Hb_004190_030 Hb_004190_030 Hb_001140_330--Hb_004190_030 Hb_001140_330--Hb_000563_060 Hb_004267_050 Hb_004267_050 Hb_001140_330--Hb_004267_050 Hb_003119_110 Hb_003119_110 Hb_001140_330--Hb_003119_110 Hb_001140_330--Hb_002835_020 Hb_153208_010 Hb_153208_010 Hb_001140_330--Hb_153208_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0620279 2.25476 0.727671 1.90171 0.181865 0.790909
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0284156 0.156494 0.463423 100.472 0.0469243

CAGE analysis