Hb_022250_160

Information

Type -
Description -
Location Contig22250: 105320-111188
Sequence    

Annotation

kegg
ID rcu:RCOM_1502990
description respiratory burst oxidase, putative (EC:1.6.3.1)
nr
ID ADR70880.1
description respiratory burst oxidase A [Manihot esculenta]
swissprot
ID Q2HXL0
description Respiratory burst oxidase homolog protein C OS=Solanum tuberosum GN=RBOHC PE=1 SV=2
trembl
ID V9HYZ7
description Respiratory burst oxidase A OS=Manihot esculenta GN=RbohA PE=2 SV=1
Gene Ontology
ID GO:0016021
description respiratory burst oxidase homolog protein c-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23042: 105353-110875
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_022250_160 0.0 - - respiratory burst oxidase A [Manihot esculenta]
2 Hb_004079_100 0.0769343104 - - PREDICTED: uncharacterized protein LOC105637705 [Jatropha curcas]
3 Hb_007416_290 0.0858194074 - - PREDICTED: plasma membrane ATPase 4-like [Pyrus x bretschneideri]
4 Hb_001040_200 0.0892401884 - - PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like [Jatropha curcas]
5 Hb_007386_030 0.0999821879 - - PREDICTED: formin-like protein 2 [Jatropha curcas]
6 Hb_008566_080 0.1062874686 - - PREDICTED: uncharacterized protein LOC105647834 [Jatropha curcas]
7 Hb_000594_160 0.1084533283 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 8 [Jatropha curcas]
8 Hb_002448_020 0.1115693015 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
9 Hb_001677_090 0.1144022102 - - PREDICTED: CASP-like protein 5B2 [Jatropha curcas]
10 Hb_000014_080 0.1158922367 - - PREDICTED: UDP-glycosyltransferase 87A1-like [Jatropha curcas]
11 Hb_005731_070 0.1162999994 - - conserved hypothetical protein [Ricinus communis]
12 Hb_019026_050 0.1192186681 - - conserved hypothetical protein [Ricinus communis]
13 Hb_003847_050 0.1208874789 - - PREDICTED: aquaporin SIP1-1 [Jatropha curcas]
14 Hb_000956_070 0.1208918622 - - PREDICTED: probable serine/threonine-protein kinase At1g01540 [Jatropha curcas]
15 Hb_011129_020 0.1220279973 - - Beta-1,3-galactosyltransferase sqv-2, putative [Ricinus communis]
16 Hb_000011_370 0.1256687754 - - PREDICTED: uncharacterized protein LOC105631333 [Jatropha curcas]
17 Hb_004282_010 0.1259543563 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At2g24230 [Jatropha curcas]
18 Hb_006846_030 0.1273729025 - - respiratory burst oxidase A [Manihot esculenta]
19 Hb_007875_020 0.1276459206 - - PREDICTED: pyruvate kinase, cytosolic isozyme-like [Jatropha curcas]
20 Hb_005766_010 0.1289270565 - - serine carboxypeptidase, putative [Ricinus communis]

Gene co-expression network

sample Hb_022250_160 Hb_022250_160 Hb_004079_100 Hb_004079_100 Hb_022250_160--Hb_004079_100 Hb_007416_290 Hb_007416_290 Hb_022250_160--Hb_007416_290 Hb_001040_200 Hb_001040_200 Hb_022250_160--Hb_001040_200 Hb_007386_030 Hb_007386_030 Hb_022250_160--Hb_007386_030 Hb_008566_080 Hb_008566_080 Hb_022250_160--Hb_008566_080 Hb_000594_160 Hb_000594_160 Hb_022250_160--Hb_000594_160 Hb_011129_020 Hb_011129_020 Hb_004079_100--Hb_011129_020 Hb_003411_020 Hb_003411_020 Hb_004079_100--Hb_003411_020 Hb_004079_100--Hb_008566_080 Hb_000120_320 Hb_000120_320 Hb_004079_100--Hb_000120_320 Hb_004079_100--Hb_000594_160 Hb_008143_040 Hb_008143_040 Hb_007416_290--Hb_008143_040 Hb_009545_030 Hb_009545_030 Hb_007416_290--Hb_009545_030 Hb_007134_030 Hb_007134_030 Hb_007416_290--Hb_007134_030 Hb_007416_290--Hb_004079_100 Hb_000946_070 Hb_000946_070 Hb_007416_290--Hb_000946_070 Hb_001040_200--Hb_000594_160 Hb_001040_200--Hb_007386_030 Hb_004282_010 Hb_004282_010 Hb_001040_200--Hb_004282_010 Hb_001040_200--Hb_004079_100 Hb_002448_020 Hb_002448_020 Hb_001040_200--Hb_002448_020 Hb_007386_030--Hb_000594_160 Hb_007875_020 Hb_007875_020 Hb_007386_030--Hb_007875_020 Hb_005731_070 Hb_005731_070 Hb_007386_030--Hb_005731_070 Hb_065521_010 Hb_065521_010 Hb_007386_030--Hb_065521_010 Hb_007386_030--Hb_008566_080 Hb_000011_370 Hb_000011_370 Hb_008566_080--Hb_000011_370 Hb_000014_080 Hb_000014_080 Hb_008566_080--Hb_000014_080 Hb_008566_080--Hb_003411_020 Hb_005766_010 Hb_005766_010 Hb_000594_160--Hb_005766_010 Hb_000594_160--Hb_005731_070 Hb_000866_190 Hb_000866_190 Hb_000594_160--Hb_000866_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0838284 12.3438 23.4731 47.241 0.107667 0.262515
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.138145 2.10508 0.530473 42.307 20.5012

CAGE analysis