Hb_022250_170

Information

Type -
Description -
Location Contig22250: 115356-117515
Sequence    

Annotation

kegg
ID cic:CICLE_v10033882mg
description hypothetical protein
nr
ID XP_011003536.1
description PREDICTED: pentatricopeptide repeat-containing protein At3g26782, mitochondrial-like [Populus euphratica]
swissprot
ID O81767
description Pentatricopeptide repeat-containing protein At4g33990 OS=Arabidopsis thaliana GN=EMB2758 PE=3 SV=2
trembl
ID V4TKE6
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033882mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_022250_170 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At3g26782, mitochondrial-like [Populus euphratica]
2 Hb_015884_030 0.1363792648 - - PREDICTED: uncharacterized protein LOC105647778 isoform X1 [Jatropha curcas]
3 Hb_003847_120 0.1480832702 - - WD-repeat protein, putative [Ricinus communis]
4 Hb_000042_270 0.1492008957 - - myosin vIII, putative [Ricinus communis]
5 Hb_000679_130 0.1492248472 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
6 Hb_000034_040 0.1515040214 - - PREDICTED: histidine--tRNA ligase [Jatropha curcas]
7 Hb_000768_190 0.1523773844 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
8 Hb_006915_060 0.1536096068 - - PREDICTED: zinc finger BED domain-containing protein DAYSLEEPER-like [Jatropha curcas]
9 Hb_002276_060 0.1546601795 - - hypothetical protein CISIN_1g002019mg [Citrus sinensis]
10 Hb_064903_010 0.155132428 - - PREDICTED: T-complex protein 1 subunit delta [Jatropha curcas]
11 Hb_001752_030 0.1554068302 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 4 [Jatropha curcas]
12 Hb_002232_030 0.155498947 - - Pinin, putative [Ricinus communis]
13 Hb_003938_080 0.1562299793 - - PREDICTED: uncharacterized protein LOC105644554 [Jatropha curcas]
14 Hb_007943_100 0.1569266742 - - unnamed protein product [Coffea canephora]
15 Hb_008247_010 0.1576336035 - - PREDICTED: leucine--tRNA ligase, cytoplasmic [Jatropha curcas]
16 Hb_000850_050 0.1579294336 - - PREDICTED: pentatricopeptide repeat-containing protein At1g63330-like [Jatropha curcas]
17 Hb_004048_090 0.1604401471 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g53330 [Jatropha curcas]
18 Hb_011139_030 0.1622532362 - - PREDICTED: E3 ubiquitin-protein ligase MBR2-like [Jatropha curcas]
19 Hb_000010_180 0.1642346544 - - PREDICTED: 28 kDa ribonucleoprotein, chloroplastic-like [Jatropha curcas]
20 Hb_003544_100 0.1647821999 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g59900 [Jatropha curcas]

Gene co-expression network

sample Hb_022250_170 Hb_022250_170 Hb_015884_030 Hb_015884_030 Hb_022250_170--Hb_015884_030 Hb_003847_120 Hb_003847_120 Hb_022250_170--Hb_003847_120 Hb_000042_270 Hb_000042_270 Hb_022250_170--Hb_000042_270 Hb_000679_130 Hb_000679_130 Hb_022250_170--Hb_000679_130 Hb_000034_040 Hb_000034_040 Hb_022250_170--Hb_000034_040 Hb_000768_190 Hb_000768_190 Hb_022250_170--Hb_000768_190 Hb_015884_030--Hb_000034_040 Hb_003938_080 Hb_003938_080 Hb_015884_030--Hb_003938_080 Hb_003544_100 Hb_003544_100 Hb_015884_030--Hb_003544_100 Hb_009411_010 Hb_009411_010 Hb_015884_030--Hb_009411_010 Hb_000010_180 Hb_000010_180 Hb_015884_030--Hb_000010_180 Hb_006915_060 Hb_006915_060 Hb_015884_030--Hb_006915_060 Hb_015026_050 Hb_015026_050 Hb_003847_120--Hb_015026_050 Hb_020665_030 Hb_020665_030 Hb_003847_120--Hb_020665_030 Hb_001473_090 Hb_001473_090 Hb_003847_120--Hb_001473_090 Hb_003847_120--Hb_006915_060 Hb_000475_020 Hb_000475_020 Hb_003847_120--Hb_000475_020 Hb_000029_320 Hb_000029_320 Hb_003847_120--Hb_000029_320 Hb_000197_210 Hb_000197_210 Hb_000042_270--Hb_000197_210 Hb_006816_390 Hb_006816_390 Hb_000042_270--Hb_006816_390 Hb_000042_270--Hb_000679_130 Hb_000034_050 Hb_000034_050 Hb_000042_270--Hb_000034_050 Hb_000236_380 Hb_000236_380 Hb_000042_270--Hb_000236_380 Hb_000836_630 Hb_000836_630 Hb_000042_270--Hb_000836_630 Hb_000025_110 Hb_000025_110 Hb_000679_130--Hb_000025_110 Hb_001444_010 Hb_001444_010 Hb_000679_130--Hb_001444_010 Hb_000367_130 Hb_000367_130 Hb_000679_130--Hb_000367_130 Hb_001599_030 Hb_001599_030 Hb_000679_130--Hb_001599_030 Hb_007262_020 Hb_007262_020 Hb_000679_130--Hb_007262_020 Hb_000679_130--Hb_006915_060 Hb_006915_070 Hb_006915_070 Hb_000034_040--Hb_006915_070 Hb_012799_030 Hb_012799_030 Hb_000034_040--Hb_012799_030 Hb_000034_040--Hb_003938_080 Hb_000034_040--Hb_009411_010 Hb_002681_070 Hb_002681_070 Hb_000034_040--Hb_002681_070 Hb_064903_010 Hb_064903_010 Hb_000768_190--Hb_064903_010 Hb_000037_110 Hb_000037_110 Hb_000768_190--Hb_000037_110 Hb_000768_190--Hb_003544_100 Hb_007943_100 Hb_007943_100 Hb_000768_190--Hb_007943_100 Hb_008595_010 Hb_008595_010 Hb_000768_190--Hb_008595_010 Hb_000768_190--Hb_006915_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.30654 0.15067 0.131492 0.134255 0.447553 0.471563
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0621863 0.163105 0.27892 0.0389069 0.310902

CAGE analysis