Hb_022256_020

Information

Type -
Description -
Location Contig22256: 12403-14820
Sequence    

Annotation

kegg
ID pop:POPTR_0004s18470g
description POPTRDRAFT_759883; hypothetical protein
nr
ID XP_012077735.1
description PREDICTED: pentatricopeptide repeat-containing protein At4g35130, chloroplastic [Jatropha curcas]
swissprot
ID O49619
description Pentatricopeptide repeat-containing protein At4g35130, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H27 PE=3 SV=1
trembl
ID B9H1L5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s18470g PE=4 SV=1
Gene Ontology
ID GO:0005515
description pentatricopeptide repeat-containing protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 040_E16.ab1: 14213-14984 , 050_N06.ab1: 14267-14984

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_022256_020 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At4g35130, chloroplastic [Jatropha curcas]
2 Hb_000484_130 0.0536906611 - - splicing factor, putative [Ricinus communis]
3 Hb_002675_130 0.0640652899 - - PREDICTED: N-alpha-acetyltransferase 16, NatA auxiliary subunit isoform X1 [Jatropha curcas]
4 Hb_002234_090 0.065938853 - - PREDICTED: probable transcriptional regulator SLK2 [Jatropha curcas]
5 Hb_004916_010 0.0668051724 - - PREDICTED: uncharacterized protein LOC105631086 [Jatropha curcas]
6 Hb_033772_030 0.0681153394 - - PREDICTED: CST complex subunit CTC1 [Jatropha curcas]
7 Hb_002818_030 0.0698450804 - - PREDICTED: protein transport protein SEC23 [Jatropha curcas]
8 Hb_000926_090 0.0699615876 - - PREDICTED: dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial-like [Jatropha curcas]
9 Hb_003464_090 0.0707409833 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105642342 [Jatropha curcas]
10 Hb_003849_110 0.0757698943 - - hypothetical protein JCGZ_17842 [Jatropha curcas]
11 Hb_007163_120 0.0765839873 - - PREDICTED: COMPASS-like H3K4 histone methylase component WDR5A [Jatropha curcas]
12 Hb_003657_010 0.0776889948 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000331_670 0.0789646707 - - PREDICTED: protein tipD [Jatropha curcas]
14 Hb_004117_260 0.0797402873 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002900_090 0.0800276051 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105646817 [Jatropha curcas]
16 Hb_000172_430 0.0815010096 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002217_170 0.0816842558 - - PREDICTED: E3 ubiquitin-protein ligase UPL6-like isoform X1 [Gossypium raimondii]
18 Hb_000297_010 0.0818623244 - - PREDICTED: uncharacterized protein LOC105637916 isoform X2 [Jatropha curcas]
19 Hb_004208_030 0.0827300107 transcription factor TF Family: MYB-related PREDICTED: TSL-kinase interacting protein 1 [Jatropha curcas]
20 Hb_001838_060 0.0843897527 transcription factor TF Family: bZIP PREDICTED: transcription factor HBP-1b(c38)-like isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_022256_020 Hb_022256_020 Hb_000484_130 Hb_000484_130 Hb_022256_020--Hb_000484_130 Hb_002675_130 Hb_002675_130 Hb_022256_020--Hb_002675_130 Hb_002234_090 Hb_002234_090 Hb_022256_020--Hb_002234_090 Hb_004916_010 Hb_004916_010 Hb_022256_020--Hb_004916_010 Hb_033772_030 Hb_033772_030 Hb_022256_020--Hb_033772_030 Hb_002818_030 Hb_002818_030 Hb_022256_020--Hb_002818_030 Hb_001359_050 Hb_001359_050 Hb_000484_130--Hb_001359_050 Hb_003849_110 Hb_003849_110 Hb_000484_130--Hb_003849_110 Hb_012239_020 Hb_012239_020 Hb_000484_130--Hb_012239_020 Hb_001221_110 Hb_001221_110 Hb_000484_130--Hb_001221_110 Hb_003464_090 Hb_003464_090 Hb_000484_130--Hb_003464_090 Hb_002675_130--Hb_002234_090 Hb_004787_050 Hb_004787_050 Hb_002675_130--Hb_004787_050 Hb_001998_240 Hb_001998_240 Hb_002675_130--Hb_001998_240 Hb_002675_130--Hb_004916_010 Hb_011618_070 Hb_011618_070 Hb_002675_130--Hb_011618_070 Hb_010712_050 Hb_010712_050 Hb_002234_090--Hb_010712_050 Hb_002234_090--Hb_004916_010 Hb_003835_070 Hb_003835_070 Hb_002234_090--Hb_003835_070 Hb_003768_050 Hb_003768_050 Hb_002234_090--Hb_003768_050 Hb_003544_060 Hb_003544_060 Hb_002234_090--Hb_003544_060 Hb_004916_010--Hb_002818_030 Hb_004916_010--Hb_003849_110 Hb_000029_060 Hb_000029_060 Hb_004916_010--Hb_000029_060 Hb_000015_170 Hb_000015_170 Hb_004916_010--Hb_000015_170 Hb_001716_020 Hb_001716_020 Hb_004916_010--Hb_001716_020 Hb_007163_120 Hb_007163_120 Hb_033772_030--Hb_007163_120 Hb_006922_010 Hb_006922_010 Hb_033772_030--Hb_006922_010 Hb_002900_090 Hb_002900_090 Hb_033772_030--Hb_002900_090 Hb_003370_030 Hb_003370_030 Hb_033772_030--Hb_003370_030 Hb_007765_110 Hb_007765_110 Hb_033772_030--Hb_007765_110 Hb_033772_030--Hb_003464_090 Hb_019863_070 Hb_019863_070 Hb_002818_030--Hb_019863_070 Hb_002818_030--Hb_003849_110 Hb_000049_260 Hb_000049_260 Hb_002818_030--Hb_000049_260 Hb_002798_070 Hb_002798_070 Hb_002818_030--Hb_002798_070 Hb_000069_310 Hb_000069_310 Hb_002818_030--Hb_000069_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.929114 1.80798 1.24291 0.935439 0.784329 1.05554
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.0626 1.25421 1.70273 1.33992 0.918592

CAGE analysis