Hb_022256_040

Information

Type -
Description -
Location Contig22256: 29031-33250
Sequence    

Annotation

kegg
ID rcu:RCOM_1399270
description zinc finger protein, putative
nr
ID XP_012064880.1
description PREDICTED: probable E3 ubiquitin-protein ligase rbrA isoform X2 [Jatropha curcas]
swissprot
ID Q9SKC3
description Probable E3 ubiquitin-protein ligase ARI9 OS=Arabidopsis thaliana GN=ARI9 PE=2 SV=1
trembl
ID A0A067LA56
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05580 PE=4 SV=1
Gene Ontology
ID GO:0004842
description zinc finger

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23045: 29215-33207
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_022256_040 0.0 - - PREDICTED: probable E3 ubiquitin-protein ligase rbrA isoform X2 [Jatropha curcas]
2 Hb_002997_100 0.0582600362 - - hypothetical protein JCGZ_19555 [Jatropha curcas]
3 Hb_002874_070 0.0748157662 - - PREDICTED: RNA-binding KH domain-containing protein PEPPER-like [Jatropha curcas]
4 Hb_002631_050 0.0770675517 - - membrane associated ring finger 1,8, putative [Ricinus communis]
5 Hb_000733_060 0.0786501498 - - PREDICTED: protein GUCD1 isoform X1 [Jatropha curcas]
6 Hb_000230_330 0.0792415741 - - PREDICTED: calcium-binding protein 39-like [Populus euphratica]
7 Hb_001584_110 0.079426182 - - PREDICTED: importin subunit alpha-4 isoform X2 [Jatropha curcas]
8 Hb_182026_010 0.0840954367 - - hypothetical protein CICLE_v10003487mg, partial [Citrus clementina]
9 Hb_023226_060 0.0853757736 - - unnamed protein product [Vitis vinifera]
10 Hb_004440_100 0.0870033669 - - PREDICTED: transmembrane protein 53 [Jatropha curcas]
11 Hb_011282_030 0.087562346 - - PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH8 isoform X1 [Jatropha curcas]
12 Hb_000078_130 0.0888723892 - - -
13 Hb_185467_020 0.0906380054 - - Cucumisin precursor, putative [Ricinus communis]
14 Hb_001135_160 0.0908756906 - - PREDICTED: elongator complex protein 6 [Jatropha curcas]
15 Hb_000340_510 0.0919185536 - - PREDICTED: serine/threonine-protein phosphatase BSL1 [Jatropha curcas]
16 Hb_005288_160 0.0924213867 - - PREDICTED: uncharacterized protein LOC105647746 isoform X1 [Jatropha curcas]
17 Hb_011316_110 0.0924741807 - - PREDICTED: receptor-like serine/threonine-protein kinase At4g25390 [Jatropha curcas]
18 Hb_007447_010 0.0927623192 - - PREDICTED: CBS domain-containing protein CBSCBSPB3 isoform X3 [Jatropha curcas]
19 Hb_000329_390 0.0933518468 transcription factor TF Family: C2H2 conserved hypothetical protein [Ricinus communis]
20 Hb_000107_100 0.0941552586 - - hypothetical protein JCGZ_16208 [Jatropha curcas]

Gene co-expression network

sample Hb_022256_040 Hb_022256_040 Hb_002997_100 Hb_002997_100 Hb_022256_040--Hb_002997_100 Hb_002874_070 Hb_002874_070 Hb_022256_040--Hb_002874_070 Hb_002631_050 Hb_002631_050 Hb_022256_040--Hb_002631_050 Hb_000733_060 Hb_000733_060 Hb_022256_040--Hb_000733_060 Hb_000230_330 Hb_000230_330 Hb_022256_040--Hb_000230_330 Hb_001584_110 Hb_001584_110 Hb_022256_040--Hb_001584_110 Hb_182026_010 Hb_182026_010 Hb_002997_100--Hb_182026_010 Hb_000078_130 Hb_000078_130 Hb_002997_100--Hb_000078_130 Hb_002997_100--Hb_000230_330 Hb_002997_100--Hb_000733_060 Hb_012654_010 Hb_012654_010 Hb_002997_100--Hb_012654_010 Hb_002874_070--Hb_001584_110 Hb_004440_100 Hb_004440_100 Hb_002874_070--Hb_004440_100 Hb_185467_020 Hb_185467_020 Hb_002874_070--Hb_185467_020 Hb_002928_060 Hb_002928_060 Hb_002874_070--Hb_002928_060 Hb_001936_050 Hb_001936_050 Hb_002874_070--Hb_001936_050 Hb_002631_050--Hb_185467_020 Hb_008453_150 Hb_008453_150 Hb_002631_050--Hb_008453_150 Hb_000017_120 Hb_000017_120 Hb_002631_050--Hb_000017_120 Hb_000340_510 Hb_000340_510 Hb_002631_050--Hb_000340_510 Hb_002631_050--Hb_000733_060 Hb_005288_160 Hb_005288_160 Hb_000733_060--Hb_005288_160 Hb_023226_060 Hb_023226_060 Hb_000733_060--Hb_023226_060 Hb_000768_030 Hb_000768_030 Hb_000733_060--Hb_000768_030 Hb_001001_160 Hb_001001_160 Hb_000733_060--Hb_001001_160 Hb_000230_330--Hb_001584_110 Hb_000390_060 Hb_000390_060 Hb_000230_330--Hb_000390_060 Hb_001504_160 Hb_001504_160 Hb_000230_330--Hb_001504_160 Hb_000462_150 Hb_000462_150 Hb_000230_330--Hb_000462_150 Hb_003434_060 Hb_003434_060 Hb_000230_330--Hb_003434_060 Hb_000076_080 Hb_000076_080 Hb_000230_330--Hb_000076_080 Hb_014568_030 Hb_014568_030 Hb_001584_110--Hb_014568_030 Hb_011282_030 Hb_011282_030 Hb_001584_110--Hb_011282_030 Hb_001584_110--Hb_000390_060 Hb_001584_110--Hb_000462_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
89.7683 18.1541 23.1381 26.6929 126.066 101.146
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
56.8737 39.9118 78.3996 31.4611 14.255

CAGE analysis