Hb_022288_020

Information

Type -
Description -
Location Contig22288: 29247-35005
Sequence    

Annotation

kegg
ID pop:POPTR_0006s08590g
description hypothetical protein
nr
ID XP_006381195.1
description hypothetical protein POPTR_0006s08590g [Populus trichocarpa]
swissprot
ID P91133
description E3 ubiquitin-protein ligase ubr-1 OS=Caenorhabditis elegans GN=ubr-1 PE=1 SV=2
trembl
ID U5GC51
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s08590g PE=4 SV=1
Gene Ontology
ID GO:0008270
description e3 ubiquitin-protein ligase ubr1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23083: 34110-35016
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_022288_020 0.0 - - hypothetical protein POPTR_0006s08590g [Populus trichocarpa]
2 Hb_000077_130 0.121770391 - - PREDICTED: callose synthase 12 [Jatropha curcas]
3 Hb_007926_040 0.1502157345 - - sulfate transporter, putative [Ricinus communis]
4 Hb_010436_030 0.150489475 - - Ribonuclease III, putative [Ricinus communis]
5 Hb_006026_040 0.1526719149 - - PREDICTED: 60S ribosomal protein L13a-4-like [Jatropha curcas]
6 Hb_000016_110 0.1536812203 - - PREDICTED: pentatricopeptide repeat-containing protein At4g38010 [Jatropha curcas]
7 Hb_000497_140 0.1550331309 - - PREDICTED: pentatricopeptide repeat-containing protein At3g12770-like [Jatropha curcas]
8 Hb_049675_010 0.1572302454 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
9 Hb_189118_010 0.1584552109 - - PREDICTED: extended synaptotagmin-1 [Cucumis melo]
10 Hb_012055_020 0.159451241 - - PREDICTED: metal transporter Nramp3 [Jatropha curcas]
11 Hb_010436_020 0.1616783469 - - Dicer-like protein 4 [Morus notabilis]
12 Hb_022288_010 0.162426889 - - ubiquitin ligase E3 alpha, putative [Ricinus communis]
13 Hb_036034_010 0.1652653432 - - conserved hypothetical protein [Ricinus communis]
14 Hb_005399_010 0.167289857 - - PREDICTED: E3 ubiquitin-protein ligase UPL5 [Jatropha curcas]
15 Hb_002233_090 0.1714487685 - - PREDICTED: bromodomain-containing protein 3 [Jatropha curcas]
16 Hb_012395_190 0.1714591623 - - hypothetical protein B456_005G053800 [Gossypium raimondii]
17 Hb_000457_160 0.1722820539 - - PREDICTED: uncharacterized protein LOC105633076 [Jatropha curcas]
18 Hb_051407_010 0.1728646348 - - protein farnesyltransferase alpha subunit, putative [Ricinus communis]
19 Hb_005280_010 0.1751700341 - - PREDICTED: protein phosphatase 2C 29 [Jatropha curcas]
20 Hb_000122_130 0.1766276274 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_022288_020 Hb_022288_020 Hb_000077_130 Hb_000077_130 Hb_022288_020--Hb_000077_130 Hb_007926_040 Hb_007926_040 Hb_022288_020--Hb_007926_040 Hb_010436_030 Hb_010436_030 Hb_022288_020--Hb_010436_030 Hb_006026_040 Hb_006026_040 Hb_022288_020--Hb_006026_040 Hb_000016_110 Hb_000016_110 Hb_022288_020--Hb_000016_110 Hb_000497_140 Hb_000497_140 Hb_022288_020--Hb_000497_140 Hb_000077_130--Hb_000497_140 Hb_001584_110 Hb_001584_110 Hb_000077_130--Hb_001584_110 Hb_012055_020 Hb_012055_020 Hb_000077_130--Hb_012055_020 Hb_000236_250 Hb_000236_250 Hb_000077_130--Hb_000236_250 Hb_002874_070 Hb_002874_070 Hb_000077_130--Hb_002874_070 Hb_006091_030 Hb_006091_030 Hb_000077_130--Hb_006091_030 Hb_007926_040--Hb_000016_110 Hb_004048_090 Hb_004048_090 Hb_007926_040--Hb_004048_090 Hb_041091_010 Hb_041091_010 Hb_007926_040--Hb_041091_010 Hb_012395_190 Hb_012395_190 Hb_007926_040--Hb_012395_190 Hb_010436_020 Hb_010436_020 Hb_007926_040--Hb_010436_020 Hb_008247_010 Hb_008247_010 Hb_010436_030--Hb_008247_010 Hb_010436_030--Hb_010436_020 Hb_003001_150 Hb_003001_150 Hb_010436_030--Hb_003001_150 Hb_000005_380 Hb_000005_380 Hb_010436_030--Hb_000005_380 Hb_004440_100 Hb_004440_100 Hb_010436_030--Hb_004440_100 Hb_123777_030 Hb_123777_030 Hb_010436_030--Hb_123777_030 Hb_000424_240 Hb_000424_240 Hb_006026_040--Hb_000424_240 Hb_006026_040--Hb_000077_130 Hb_036034_010 Hb_036034_010 Hb_006026_040--Hb_036034_010 Hb_000248_050 Hb_000248_050 Hb_006026_040--Hb_000248_050 Hb_022288_010 Hb_022288_010 Hb_006026_040--Hb_022288_010 Hb_000307_200 Hb_000307_200 Hb_006026_040--Hb_000307_200 Hb_005399_010 Hb_005399_010 Hb_000016_110--Hb_005399_010 Hb_000016_110--Hb_000497_140 Hb_000016_110--Hb_006091_030 Hb_000016_110--Hb_022288_010 Hb_000016_110--Hb_041091_010 Hb_012016_020 Hb_012016_020 Hb_000016_110--Hb_012016_020 Hb_000497_140--Hb_005399_010 Hb_000497_140--Hb_006091_030 Hb_000106_040 Hb_000106_040 Hb_000497_140--Hb_000106_040 Hb_000086_590 Hb_000086_590 Hb_000497_140--Hb_000086_590
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.68324 1.95013 0.527802 1.01698 13.0126 23.8591
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.62729 1.81593 13.7677 4.03077 5.14537

CAGE analysis