Hb_022400_010

Information

Type -
Description -
Location Contig22400: 12922-15064
Sequence    

Annotation

kegg
ID tcc:TCM_029112
description Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein
nr
ID XP_007024594.1
description Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein [Theobroma cacao]
swissprot
ID Q8RUF8
description Omega-amidase,chloroplastic OS=Arabidopsis thaliana GN=NLP3 PE=1 SV=1
trembl
ID A0A061GCD2
description Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein OS=Theobroma cacao GN=TCM_029112 PE=4 SV=1
Gene Ontology
ID GO:0003824
description omega- -like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_022400_010 0.0 - - Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein [Theobroma cacao]
2 Hb_146109_010 0.084077498 - - conserved hypothetical protein [Ricinus communis]
3 Hb_004602_040 0.1052140636 - - PREDICTED: leukocyte receptor cluster member 8 homolog isoform X1 [Jatropha curcas]
4 Hb_001900_110 0.1145128366 - - PREDICTED: replication protein A 70 kDa DNA-binding subunit E [Jatropha curcas]
5 Hb_000592_090 0.1167467302 - - PREDICTED: pentatricopeptide repeat-containing protein At3g18020 [Jatropha curcas]
6 Hb_000136_060 0.1173639905 - - hypothetical protein POPTR_0016s06250g [Populus trichocarpa]
7 Hb_000740_110 0.1179007791 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_01850 [Jatropha curcas]
8 Hb_001437_180 0.1182765161 desease resistance Gene Name: CDC48_N PREDICTED: cell division cycle protein 48 homolog [Jatropha curcas]
9 Hb_029142_010 0.1191712386 - - PREDICTED: H/ACA ribonucleoprotein complex subunit 4 [Jatropha curcas]
10 Hb_005228_130 0.1194957847 - - PREDICTED: uncharacterized protein At3g15000, mitochondrial isoform X1 [Jatropha curcas]
11 Hb_002636_050 0.1199187857 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g68930 [Jatropha curcas]
12 Hb_000856_310 0.1206345811 - - PREDICTED: hypersensitive-induced response protein 1 [Jatropha curcas]
13 Hb_000271_090 0.1210206608 - - WD-repeat protein, putative [Ricinus communis]
14 Hb_001912_100 0.1219902373 - - PREDICTED: uncharacterized protein LOC105636609 [Jatropha curcas]
15 Hb_000244_220 0.1234156427 - - PREDICTED: bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplastic-like [Jatropha curcas]
16 Hb_006588_150 0.124250992 - - PREDICTED: steroid 5-alpha-reductase DET2 [Jatropha curcas]
17 Hb_000084_120 0.127195136 - - PREDICTED: pentatricopeptide repeat-containing protein At2g36240 [Jatropha curcas]
18 Hb_000369_130 0.127633905 - - PREDICTED: H/ACA ribonucleoprotein complex subunit 4 [Jatropha curcas]
19 Hb_004117_310 0.1300853222 - - PREDICTED: uncharacterized protein LOC105648043 [Jatropha curcas]
20 Hb_001034_070 0.1305997039 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]

Gene co-expression network

sample Hb_022400_010 Hb_022400_010 Hb_146109_010 Hb_146109_010 Hb_022400_010--Hb_146109_010 Hb_004602_040 Hb_004602_040 Hb_022400_010--Hb_004602_040 Hb_001900_110 Hb_001900_110 Hb_022400_010--Hb_001900_110 Hb_000592_090 Hb_000592_090 Hb_022400_010--Hb_000592_090 Hb_000136_060 Hb_000136_060 Hb_022400_010--Hb_000136_060 Hb_000740_110 Hb_000740_110 Hb_022400_010--Hb_000740_110 Hb_146109_010--Hb_004602_040 Hb_013399_070 Hb_013399_070 Hb_146109_010--Hb_013399_070 Hb_031284_040 Hb_031284_040 Hb_146109_010--Hb_031284_040 Hb_004117_310 Hb_004117_310 Hb_146109_010--Hb_004117_310 Hb_000236_310 Hb_000236_310 Hb_146109_010--Hb_000236_310 Hb_001912_100 Hb_001912_100 Hb_004602_040--Hb_001912_100 Hb_000084_120 Hb_000084_120 Hb_004602_040--Hb_000084_120 Hb_000244_220 Hb_000244_220 Hb_004602_040--Hb_000244_220 Hb_000101_240 Hb_000101_240 Hb_004602_040--Hb_000101_240 Hb_000035_290 Hb_000035_290 Hb_004602_040--Hb_000035_290 Hb_123352_020 Hb_123352_020 Hb_004602_040--Hb_123352_020 Hb_141547_010 Hb_141547_010 Hb_001900_110--Hb_141547_010 Hb_000158_100 Hb_000158_100 Hb_001900_110--Hb_000158_100 Hb_029142_010 Hb_029142_010 Hb_001900_110--Hb_029142_010 Hb_000997_030 Hb_000997_030 Hb_001900_110--Hb_000997_030 Hb_000023_060 Hb_000023_060 Hb_001900_110--Hb_000023_060 Hb_000236_080 Hb_000236_080 Hb_001900_110--Hb_000236_080 Hb_004767_050 Hb_004767_050 Hb_000592_090--Hb_004767_050 Hb_076693_020 Hb_076693_020 Hb_000592_090--Hb_076693_020 Hb_000592_090--Hb_004602_040 Hb_000322_150 Hb_000322_150 Hb_000592_090--Hb_000322_150 Hb_093084_060 Hb_093084_060 Hb_000592_090--Hb_093084_060 Hb_074969_010 Hb_074969_010 Hb_000592_090--Hb_074969_010 Hb_000136_060--Hb_000158_100 Hb_002028_170 Hb_002028_170 Hb_000136_060--Hb_002028_170 Hb_003623_030 Hb_003623_030 Hb_000136_060--Hb_003623_030 Hb_011716_020 Hb_011716_020 Hb_000136_060--Hb_011716_020 Hb_000743_050 Hb_000743_050 Hb_000136_060--Hb_000743_050 Hb_000136_060--Hb_001900_110 Hb_156850_070 Hb_156850_070 Hb_000740_110--Hb_156850_070 Hb_089140_030 Hb_089140_030 Hb_000740_110--Hb_089140_030 Hb_000976_040 Hb_000976_040 Hb_000740_110--Hb_000976_040 Hb_008143_070 Hb_008143_070 Hb_000740_110--Hb_008143_070 Hb_006588_150 Hb_006588_150 Hb_000740_110--Hb_006588_150 Hb_005214_090 Hb_005214_090 Hb_000740_110--Hb_005214_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.05701 1.40543 0.205625 0.60777 0.812348 2.25242
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.757691 0.876435 0.779305 1.77221 0.505545

CAGE analysis