Hb_022425_040

Information

Type -
Description -
Location Contig22425: 29078-32880
Sequence    

Annotation

kegg
ID pop:POPTR_0018s09160g
description POPTRDRAFT_911721; hypothetical protein
nr
ID XP_012076750.1
description PREDICTED: probable RNA methyltransferase At5g51130 [Jatropha curcas]
swissprot
ID Q6NPC9
description Probable RNA methyltransferase At5g51130 OS=Arabidopsis thaliana GN=At5g51130 PE=2 SV=1
trembl
ID A0A067KN88
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07286 PE=4 SV=1
Gene Ontology
ID GO:0005737
description probable rna methyltransferase at5g51130

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23325: 29073-32913
cDNA
(Sanger)
(ID:Location)		 032_P12.ab1: 29968-32913

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_022425_040 0.0 - - PREDICTED: probable RNA methyltransferase At5g51130 [Jatropha curcas]
2 Hb_000815_060 0.0526878629 - - PREDICTED: uncharacterized protein LOC105630460 [Jatropha curcas]
3 Hb_002518_080 0.0596896003 - - PREDICTED: uncharacterized protein LOC105639837 [Jatropha curcas]
4 Hb_015279_010 0.0601926674 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
5 Hb_000217_030 0.0737920442 - - Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1 [Theobroma cacao]
6 Hb_000127_180 0.0742397236 - - 40S ribosomal protein S18, putative [Ricinus communis]
7 Hb_001832_060 0.075343417 - - PREDICTED: translation machinery-associated protein 22 [Jatropha curcas]
8 Hb_001047_230 0.0789395465 - - WD-repeat protein, putative [Ricinus communis]
9 Hb_114893_030 0.0829724352 - - PREDICTED: ribosome-recycling factor, chloroplastic [Jatropha curcas]
10 Hb_001691_140 0.0830484797 - - mitochondrial 50S ribosomal protein L21 [Hevea brasiliensis]
11 Hb_029388_020 0.0857287281 - - conserved hypothetical protein [Ricinus communis]
12 Hb_011671_100 0.0882055102 - - 60S ribosomal protein L15 [Populus trichocarpa]
13 Hb_000260_550 0.0889200295 - - PREDICTED: 60S ribosomal protein L13-1-like [Jatropha curcas]
14 Hb_000698_030 0.089125541 - - PREDICTED: 60S ribosomal protein L8 [Jatropha curcas]
15 Hb_001979_040 0.0894346126 - - PREDICTED: 60S ribosomal protein L21-1-like [Gossypium raimondii]
16 Hb_000920_110 0.08987352 - - PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP4 [Jatropha curcas]
17 Hb_003787_010 0.0904479516 - - PREDICTED: 40S ribosomal protein S3-3-like [Phoenix dactylifera]
18 Hb_003656_070 0.0907479401 - - hypothetical protein CICLE_v10009411mg [Citrus clementina]
19 Hb_004116_190 0.0910509127 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 2 [Jatropha curcas]
20 Hb_000676_180 0.0912105314 - - Ubiquitin-conjugating enzyme 16 [Theobroma cacao]

Gene co-expression network

sample Hb_022425_040 Hb_022425_040 Hb_000815_060 Hb_000815_060 Hb_022425_040--Hb_000815_060 Hb_002518_080 Hb_002518_080 Hb_022425_040--Hb_002518_080 Hb_015279_010 Hb_015279_010 Hb_022425_040--Hb_015279_010 Hb_000217_030 Hb_000217_030 Hb_022425_040--Hb_000217_030 Hb_000127_180 Hb_000127_180 Hb_022425_040--Hb_000127_180 Hb_001832_060 Hb_001832_060 Hb_022425_040--Hb_001832_060 Hb_000815_060--Hb_000217_030 Hb_000417_360 Hb_000417_360 Hb_000815_060--Hb_000417_360 Hb_000815_060--Hb_002518_080 Hb_001047_230 Hb_001047_230 Hb_000815_060--Hb_001047_230 Hb_011671_100 Hb_011671_100 Hb_000815_060--Hb_011671_100 Hb_002518_080--Hb_000127_180 Hb_002518_080--Hb_000217_030 Hb_002518_080--Hb_015279_010 Hb_114893_030 Hb_114893_030 Hb_002518_080--Hb_114893_030 Hb_001504_110 Hb_001504_110 Hb_002518_080--Hb_001504_110 Hb_003787_010 Hb_003787_010 Hb_015279_010--Hb_003787_010 Hb_000667_070 Hb_000667_070 Hb_015279_010--Hb_000667_070 Hb_004116_190 Hb_004116_190 Hb_015279_010--Hb_004116_190 Hb_000920_110 Hb_000920_110 Hb_015279_010--Hb_000920_110 Hb_015279_010--Hb_011671_100 Hb_000217_030--Hb_003787_010 Hb_000217_030--Hb_004116_190 Hb_002995_020 Hb_002995_020 Hb_000217_030--Hb_002995_020 Hb_001691_140 Hb_001691_140 Hb_000217_030--Hb_001691_140 Hb_002768_030 Hb_002768_030 Hb_000127_180--Hb_002768_030 Hb_001780_040 Hb_001780_040 Hb_000127_180--Hb_001780_040 Hb_000127_180--Hb_001504_110 Hb_000127_180--Hb_001832_060 Hb_000025_620 Hb_000025_620 Hb_000127_180--Hb_000025_620 Hb_004453_170 Hb_004453_170 Hb_001832_060--Hb_004453_170 Hb_000698_030 Hb_000698_030 Hb_001832_060--Hb_000698_030 Hb_001832_060--Hb_004116_190 Hb_001832_060--Hb_001047_230 Hb_001269_630 Hb_001269_630 Hb_001832_060--Hb_001269_630
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
34.4889 24.3332 21.5343 19.1993 21.7429 18.6863
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
34.4638 76.1023 31.3207 22.7221 12.6265

CAGE analysis