Hb_022425_050

Information

Type -
Description -
Location Contig22425: 35308-39518
Sequence    

Annotation

kegg
ID rcu:RCOM_1050970
description lactoylglutathione lyase, putative (EC:4.4.1.5)
nr
ID XP_012076751.1
description PREDICTED: probable lactoylglutathione lyase, chloroplast isoform X1 [Jatropha curcas]
swissprot
ID Q8W593
description Probable lactoylglutathione lyase, chloroplast OS=Arabidopsis thaliana GN=At1g67280 PE=1 SV=1
trembl
ID A0A067KC00
description Lactoylglutathione lyase OS=Jatropha curcas GN=JCGZ_07287 PE=3 SV=1
Gene Ontology
ID GO:0009570
description probable lactoylglutathione chloroplast

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23327: 35289-39509
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_022425_050 0.0 - - PREDICTED: probable lactoylglutathione lyase, chloroplast isoform X1 [Jatropha curcas]
2 Hb_001865_010 0.0712447478 transcription factor TF Family: B3 hypothetical protein RCOM_0465210 [Ricinus communis]
3 Hb_005731_100 0.0828848178 - - monovalent cation:proton antiporter, putative [Ricinus communis]
4 Hb_004223_270 0.0878306162 - - PREDICTED: uncharacterized protein LOC105635371 isoform X1 [Jatropha curcas]
5 Hb_000334_050 0.09317242 - - PREDICTED: vesicle-associated protein 4-1-like [Jatropha curcas]
6 Hb_001124_140 0.0937051041 - - PREDICTED: inactive beta-amylase 9 [Jatropha curcas]
7 Hb_001969_130 0.0997439539 - - PREDICTED: molybdate transporter 2 [Jatropha curcas]
8 Hb_000005_100 0.1054902602 - - PREDICTED: pheophorbide a oxygenase, chloroplastic [Jatropha curcas]
9 Hb_013968_010 0.106113264 - - PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp3 [Jatropha curcas]
10 Hb_002374_450 0.1065393276 - - PREDICTED: chlorophyllide a oxygenase, chloroplastic [Jatropha curcas]
11 Hb_000487_370 0.1072883222 - - -
12 Hb_004346_040 0.1097233001 - - hypothetical protein POPTR_0016s06630g [Populus trichocarpa]
13 Hb_002026_030 0.1112339164 desease resistance Gene Name: NB-ARC PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
14 Hb_000414_080 0.1120822661 - - PREDICTED: triosephosphate isomerase, chloroplastic [Jatropha curcas]
15 Hb_001425_010 0.113625865 - - sugar transporter, putative [Ricinus communis]
16 Hb_000665_200 0.114347996 - - calcineurin-like phosphoesterase [Manihot esculenta]
17 Hb_004052_110 0.1144041896 - - PREDICTED: host cell factor 2 isoform X1 [Jatropha curcas]
18 Hb_010632_020 0.1177371038 - - hypothetical protein POPTR_0006s185902g, partial [Populus trichocarpa]
19 Hb_001153_100 0.1200664725 transcription factor TF Family: HB PREDICTED: homeobox protein HD1 [Jatropha curcas]
20 Hb_000510_190 0.120436088 - - glutathione reductase [Hevea brasiliensis]

Gene co-expression network

sample Hb_022425_050 Hb_022425_050 Hb_001865_010 Hb_001865_010 Hb_022425_050--Hb_001865_010 Hb_005731_100 Hb_005731_100 Hb_022425_050--Hb_005731_100 Hb_004223_270 Hb_004223_270 Hb_022425_050--Hb_004223_270 Hb_000334_050 Hb_000334_050 Hb_022425_050--Hb_000334_050 Hb_001124_140 Hb_001124_140 Hb_022425_050--Hb_001124_140 Hb_001969_130 Hb_001969_130 Hb_022425_050--Hb_001969_130 Hb_001865_010--Hb_001124_140 Hb_013968_010 Hb_013968_010 Hb_001865_010--Hb_013968_010 Hb_005695_080 Hb_005695_080 Hb_001865_010--Hb_005695_080 Hb_001865_010--Hb_001969_130 Hb_001425_010 Hb_001425_010 Hb_001865_010--Hb_001425_010 Hb_005731_100--Hb_001124_140 Hb_000046_480 Hb_000046_480 Hb_005731_100--Hb_000046_480 Hb_001153_100 Hb_001153_100 Hb_005731_100--Hb_001153_100 Hb_005731_100--Hb_000334_050 Hb_001754_120 Hb_001754_120 Hb_005731_100--Hb_001754_120 Hb_000005_100 Hb_000005_100 Hb_004223_270--Hb_000005_100 Hb_000933_110 Hb_000933_110 Hb_004223_270--Hb_000933_110 Hb_004223_270--Hb_000334_050 Hb_001649_030 Hb_001649_030 Hb_004223_270--Hb_001649_030 Hb_005116_100 Hb_005116_100 Hb_004223_270--Hb_005116_100 Hb_000334_050--Hb_000933_110 Hb_027445_100 Hb_027445_100 Hb_000334_050--Hb_027445_100 Hb_000327_200 Hb_000327_200 Hb_000334_050--Hb_000327_200 Hb_001124_140--Hb_001969_130 Hb_002026_030 Hb_002026_030 Hb_001124_140--Hb_002026_030 Hb_004129_010 Hb_004129_010 Hb_001124_140--Hb_004129_010 Hb_000665_200 Hb_000665_200 Hb_001969_130--Hb_000665_200 Hb_001969_130--Hb_002026_030 Hb_000066_040 Hb_000066_040 Hb_001969_130--Hb_000066_040 Hb_001221_300 Hb_001221_300 Hb_001969_130--Hb_001221_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.2338 41.7867 69.0806 42.2464 4.47181 7.80017
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.1082 7.62962 9.03155 29.9409 104.023

CAGE analysis