Hb_022452_010

Information

Type -
Description -
Location Contig22452: 18547-20749
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_022452_010 0.0 - - -
2 Hb_001276_010 0.1490329168 desease resistance Gene Name: NB-ARC unnamed protein product [Vitis vinifera]
3 Hb_000176_060 0.1508550514 - - unnamed protein product [Vitis vinifera]
4 Hb_171659_010 0.1588110981 - - PREDICTED: uncharacterized protein LOC104903214 [Beta vulgaris subsp. vulgaris]
5 Hb_003816_020 0.161222565 - - hypothetical protein POPTR_0017s05940g [Populus trichocarpa]
6 Hb_000205_070 0.171511938 - - kinase, putative [Ricinus communis]
7 Hb_001951_120 0.1915149459 - - -
8 Hb_004939_020 0.1940193303 - - gag/pol protein [Bryonia dioica]
9 Hb_000317_090 0.2005962297 - - hypothetical protein RCOM_1176360 [Ricinus communis]
10 Hb_009189_030 0.2101278119 - - hypothetical protein PRUPE_ppa023969mg, partial [Prunus persica]
11 Hb_114868_010 0.2241726897 - - -
12 Hb_000853_300 0.2310368456 - - -
13 Hb_003222_010 0.2384899544 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
14 Hb_027255_010 0.2426710543 transcription factor TF Family: Orphans conserved hypothetical protein [Ricinus communis]
15 Hb_004631_160 0.2449484306 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-6-like [Jatropha curcas]
16 Hb_002026_230 0.2462997446 - - hypothetical protein [Beta vulgaris subsp. vulgaris]
17 Hb_003772_080 0.2547110517 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
18 Hb_003398_010 0.2566819084 - - PREDICTED: uncharacterized protein At4g02000-like [Eucalyptus grandis]
19 Hb_000836_050 0.2588755737 - - -
20 Hb_012150_070 0.2600467903 - - hypothetical protein JCGZ_04984 [Jatropha curcas]

Gene co-expression network

sample Hb_022452_010 Hb_022452_010 Hb_001276_010 Hb_001276_010 Hb_022452_010--Hb_001276_010 Hb_000176_060 Hb_000176_060 Hb_022452_010--Hb_000176_060 Hb_171659_010 Hb_171659_010 Hb_022452_010--Hb_171659_010 Hb_003816_020 Hb_003816_020 Hb_022452_010--Hb_003816_020 Hb_000205_070 Hb_000205_070 Hb_022452_010--Hb_000205_070 Hb_001951_120 Hb_001951_120 Hb_022452_010--Hb_001951_120 Hb_000317_090 Hb_000317_090 Hb_001276_010--Hb_000317_090 Hb_001276_010--Hb_000176_060 Hb_001276_010--Hb_171659_010 Hb_003772_080 Hb_003772_080 Hb_001276_010--Hb_003772_080 Hb_003222_010 Hb_003222_010 Hb_001276_010--Hb_003222_010 Hb_000176_060--Hb_000205_070 Hb_004631_160 Hb_004631_160 Hb_000176_060--Hb_004631_160 Hb_002326_060 Hb_002326_060 Hb_000176_060--Hb_002326_060 Hb_134732_010 Hb_134732_010 Hb_000176_060--Hb_134732_010 Hb_171659_010--Hb_003772_080 Hb_171659_010--Hb_000317_090 Hb_171659_010--Hb_003816_020 Hb_004939_020 Hb_004939_020 Hb_171659_010--Hb_004939_020 Hb_003816_020--Hb_004939_020 Hb_003816_020--Hb_001276_010 Hb_003816_020--Hb_000205_070 Hb_003816_020--Hb_000317_090 Hb_027255_010 Hb_027255_010 Hb_000205_070--Hb_027255_010 Hb_003337_070 Hb_003337_070 Hb_000205_070--Hb_003337_070 Hb_009189_030 Hb_009189_030 Hb_000205_070--Hb_009189_030 Hb_006745_020 Hb_006745_020 Hb_000205_070--Hb_006745_020 Hb_000853_300 Hb_000853_300 Hb_001951_120--Hb_000853_300 Hb_000853_290 Hb_000853_290 Hb_001951_120--Hb_000853_290 Hb_114868_010 Hb_114868_010 Hb_001951_120--Hb_114868_010 Hb_001951_120--Hb_009189_030 Hb_010603_030 Hb_010603_030 Hb_001951_120--Hb_010603_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.76247 0.474153 0 0 1.11608 0.659984
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis