Hb_022501_020

Information

Type -
Description -
Location Contig22501: 8606-13233
Sequence    

Annotation

kegg
ID rcu:RCOM_1600450
description AMP dependent CoA ligase, putative (EC:1.13.12.7)
nr
ID XP_002510640.1
description AMP dependent CoA ligase, putative [Ricinus communis]
swissprot
ID Q84P21
description 4-coumarate--CoA ligase-like 5 OS=Arabidopsis thaliana GN=4CLL5 PE=1 SV=2
trembl
ID B9R8J7
description AMP dependent CoA ligase, putative OS=Ricinus communis GN=RCOM_1600450 PE=4 SV=1
Gene Ontology
ID GO:0016874
description 4-coumarate-- ligase-like 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23434: 8630-13057
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_022501_020 0.0 - - AMP dependent CoA ligase, putative [Ricinus communis]
2 Hb_006241_010 0.0822331021 desease resistance Gene Name: NB-ARC Disease resistance protein RFL1, putative [Ricinus communis]
3 Hb_012807_060 0.1084219109 - - ABC transporter family protein [Hevea brasiliensis]
4 Hb_003453_030 0.1104972278 - - hypothetical protein JCGZ_26893 [Jatropha curcas]
5 Hb_002551_090 0.1123752771 - - hypothetical protein JCGZ_17224 [Jatropha curcas]
6 Hb_004044_030 0.1124515949 - - PREDICTED: uncharacterized protein LOC105639335 [Jatropha curcas]
7 Hb_006594_060 0.115893077 transcription factor TF Family: HSF PREDICTED: heat shock factor protein HSF24 [Jatropha curcas]
8 Hb_008226_120 0.115908374 - - ATP binding protein, putative [Ricinus communis]
9 Hb_000020_030 0.1164926091 - - protein binding protein, putative [Ricinus communis]
10 Hb_025432_010 0.118810235 - - hypothetical protein JCGZ_21627 [Jatropha curcas]
11 Hb_003430_020 0.1228940302 - - PREDICTED: aldehyde dehydrogenase family 2 member B7, mitochondrial-like [Jatropha curcas]
12 Hb_004195_170 0.1256633826 - - ATP binding protein, putative [Ricinus communis]
13 Hb_000236_110 0.1265049084 - - PREDICTED: chaperone protein dnaJ 20, chloroplastic [Jatropha curcas]
14 Hb_010174_190 0.128867378 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR11-like [Jatropha curcas]
15 Hb_038777_010 0.1289865897 transcription factor TF Family: G2-like PREDICTED: probable transcription factor KAN2 isoform X1 [Populus euphratica]
16 Hb_005183_200 0.129627273 - - EG964 [Manihot glaziovii]
17 Hb_001862_060 0.1339594426 - - PREDICTED: uncharacterized protein LOC105639802 isoform X1 [Jatropha curcas]
18 Hb_003052_120 0.1388796589 - - hypothetical protein POPTR_0008s10970g [Populus trichocarpa]
19 Hb_003788_010 0.1391557301 - - PREDICTED: receptor-like protein kinase HSL1 [Jatropha curcas]
20 Hb_002928_120 0.1398592742 - - 1,4-alpha-glucan branching enzyme [Manihot esculenta]

Gene co-expression network

sample Hb_022501_020 Hb_022501_020 Hb_006241_010 Hb_006241_010 Hb_022501_020--Hb_006241_010 Hb_012807_060 Hb_012807_060 Hb_022501_020--Hb_012807_060 Hb_003453_030 Hb_003453_030 Hb_022501_020--Hb_003453_030 Hb_002551_090 Hb_002551_090 Hb_022501_020--Hb_002551_090 Hb_004044_030 Hb_004044_030 Hb_022501_020--Hb_004044_030 Hb_006594_060 Hb_006594_060 Hb_022501_020--Hb_006594_060 Hb_025432_010 Hb_025432_010 Hb_006241_010--Hb_025432_010 Hb_008226_120 Hb_008226_120 Hb_006241_010--Hb_008226_120 Hb_064985_010 Hb_064985_010 Hb_006241_010--Hb_064985_010 Hb_002660_040 Hb_002660_040 Hb_006241_010--Hb_002660_040 Hb_006241_010--Hb_012807_060 Hb_009581_050 Hb_009581_050 Hb_012807_060--Hb_009581_050 Hb_003052_120 Hb_003052_120 Hb_012807_060--Hb_003052_120 Hb_012807_060--Hb_002551_090 Hb_000579_180 Hb_000579_180 Hb_012807_060--Hb_000579_180 Hb_003430_020 Hb_003430_020 Hb_012807_060--Hb_003430_020 Hb_012807_060--Hb_008226_120 Hb_004195_170 Hb_004195_170 Hb_003453_030--Hb_004195_170 Hb_001408_050 Hb_001408_050 Hb_003453_030--Hb_001408_050 Hb_003453_030--Hb_012807_060 Hb_001454_410 Hb_001454_410 Hb_003453_030--Hb_001454_410 Hb_003453_030--Hb_009581_050 Hb_001158_080 Hb_001158_080 Hb_002551_090--Hb_001158_080 Hb_000934_290 Hb_000934_290 Hb_002551_090--Hb_000934_290 Hb_008140_060 Hb_008140_060 Hb_002551_090--Hb_008140_060 Hb_002551_090--Hb_003052_120 Hb_004044_030--Hb_003430_020 Hb_000589_180 Hb_000589_180 Hb_004044_030--Hb_000589_180 Hb_005183_200 Hb_005183_200 Hb_004044_030--Hb_005183_200 Hb_004044_030--Hb_003453_030 Hb_001259_100 Hb_001259_100 Hb_004044_030--Hb_001259_100 Hb_000811_010 Hb_000811_010 Hb_006594_060--Hb_000811_010 Hb_000527_140 Hb_000527_140 Hb_006594_060--Hb_000527_140 Hb_000963_200 Hb_000963_200 Hb_006594_060--Hb_000963_200 Hb_082683_010 Hb_082683_010 Hb_006594_060--Hb_082683_010 Hb_006316_030 Hb_006316_030 Hb_006594_060--Hb_006316_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.678934 35.8361 7.11181 24.3141 1.0508 0.269746
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.614196 0.543703 1.40847 40.986 10.5108

CAGE analysis