Hb_022534_010

Information

Type -
Description -
Location Contig22534: 1168-1688
Sequence    

Annotation

kegg
ID tcc:TCM_026484
description NB-ARC domain-containing disease resistance protein, putative
nr
ID XP_006431653.1
description hypothetical protein CICLE_v10000066mg [Citrus clementina]
swissprot
ID -
description -
trembl
ID V4SBF0
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10000066mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_022534_010 0.0 - - hypothetical protein CICLE_v10000066mg [Citrus clementina]
2 Hb_127404_010 0.1775238109 - - PREDICTED: E3 ubiquitin-protein ligase UPL5-like isoform X1 [Gossypium raimondii]
3 Hb_008092_030 0.1916828748 transcription factor TF Family: AUX/IAA Auxin-responsive protein IAA27, putative [Ricinus communis]
4 Hb_187697_010 0.2205818361 - - TMV resistance protein N, putative [Ricinus communis]
5 Hb_003637_020 0.2271484606 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000960_020 0.2298884396 - - -
7 Hb_001178_040 0.2342220643 desease resistance Gene Name: ABC_trans_N PREDICTED: ABC transporter G family member 34-like [Jatropha curcas]
8 Hb_154538_010 0.2366819627 - - -
9 Hb_123885_010 0.2446812141 - - Disease resistance protein RPS5, putative [Ricinus communis]
10 Hb_000270_770 0.2463126114 - - PREDICTED: uncharacterized protein LOC105640410 [Jatropha curcas]
11 Hb_000003_430 0.2543193032 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
12 Hb_001787_070 0.2546533234 - - PREDICTED: E3 ubiquitin-protein ligase RBBP6-like [Camelina sativa]
13 Hb_012258_020 0.2578304136 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
14 Hb_004611_060 0.2583643789 - - hypothetical protein JCGZ_09913 [Jatropha curcas]
15 Hb_185513_010 0.2599053157 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000029_280 0.2610900204 - - PREDICTED: uncharacterized protein LOC105631804 [Jatropha curcas]
17 Hb_000699_190 0.2632285646 - - unknown [Populus trichocarpa]
18 Hb_035761_010 0.2654447207 - - hypothetical protein CISIN_1g022501mg [Citrus sinensis]
19 Hb_001357_280 0.2685954364 - - Mitogen-activated protein kinase kinase kinase, putative [Ricinus communis]
20 Hb_040747_010 0.2693818112 - - hypothetical protein POPTR_0009s15120g [Populus trichocarpa]

Gene co-expression network

sample Hb_022534_010 Hb_022534_010 Hb_127404_010 Hb_127404_010 Hb_022534_010--Hb_127404_010 Hb_008092_030 Hb_008092_030 Hb_022534_010--Hb_008092_030 Hb_187697_010 Hb_187697_010 Hb_022534_010--Hb_187697_010 Hb_003637_020 Hb_003637_020 Hb_022534_010--Hb_003637_020 Hb_000960_020 Hb_000960_020 Hb_022534_010--Hb_000960_020 Hb_001178_040 Hb_001178_040 Hb_022534_010--Hb_001178_040 Hb_075230_010 Hb_075230_010 Hb_127404_010--Hb_075230_010 Hb_003913_030 Hb_003913_030 Hb_127404_010--Hb_003913_030 Hb_012258_020 Hb_012258_020 Hb_127404_010--Hb_012258_020 Hb_001277_190 Hb_001277_190 Hb_127404_010--Hb_001277_190 Hb_000117_060 Hb_000117_060 Hb_127404_010--Hb_000117_060 Hb_008092_030--Hb_187697_010 Hb_007304_100 Hb_007304_100 Hb_008092_030--Hb_007304_100 Hb_008092_030--Hb_000960_020 Hb_000805_330 Hb_000805_330 Hb_008092_030--Hb_000805_330 Hb_000099_190 Hb_000099_190 Hb_008092_030--Hb_000099_190 Hb_000003_430 Hb_000003_430 Hb_187697_010--Hb_000003_430 Hb_000029_280 Hb_000029_280 Hb_187697_010--Hb_000029_280 Hb_000506_130 Hb_000506_130 Hb_187697_010--Hb_000506_130 Hb_127628_010 Hb_127628_010 Hb_187697_010--Hb_127628_010 Hb_008725_190 Hb_008725_190 Hb_187697_010--Hb_008725_190 Hb_187697_010--Hb_003913_030 Hb_185513_010 Hb_185513_010 Hb_003637_020--Hb_185513_010 Hb_103788_010 Hb_103788_010 Hb_003637_020--Hb_103788_010 Hb_003637_020--Hb_000117_060 Hb_003752_120 Hb_003752_120 Hb_003637_020--Hb_003752_120 Hb_012725_040 Hb_012725_040 Hb_003637_020--Hb_012725_040 Hb_003637_020--Hb_012258_020 Hb_003906_030 Hb_003906_030 Hb_000960_020--Hb_003906_030 Hb_091336_010 Hb_091336_010 Hb_000960_020--Hb_091336_010 Hb_178711_010 Hb_178711_010 Hb_000960_020--Hb_178711_010 Hb_000304_040 Hb_000304_040 Hb_000960_020--Hb_000304_040 Hb_001699_030 Hb_001699_030 Hb_001178_040--Hb_001699_030 Hb_154538_010 Hb_154538_010 Hb_001178_040--Hb_154538_010 Hb_003175_090 Hb_003175_090 Hb_001178_040--Hb_003175_090 Hb_000836_210 Hb_000836_210 Hb_001178_040--Hb_000836_210 Hb_000342_140 Hb_000342_140 Hb_001178_040--Hb_000342_140 Hb_001178_040--Hb_003637_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.10448 22.5507 3.25886 17.1937 1.47509 9.02583
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.60191 2.35924 0 0.337129 0.276202

CAGE analysis