Hb_022597_010

Information

Type transcription factor
Description TF Family: WRKY
Location Contig22597: 19516-23665
Sequence    

Annotation

kegg
ID vvi:100247547
description probable WRKY transcription factor 13
nr
ID XP_002279024.1
description PREDICTED: probable WRKY transcription factor 13 [Vitis vinifera]
swissprot
ID Q9SVB7
description Probable WRKY transcription factor 13 OS=Arabidopsis thaliana GN=WRKY13 PE=2 SV=1
trembl
ID D7SW85
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0031g01840 PE=4 SV=1
Gene Ontology
ID GO:0003700
description probable wrky transcription factor 13

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23486: 19447-19570 , PASA_asmbl_23487: 20395-23514
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_022597_010 0.0 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 13 [Vitis vinifera]
2 Hb_001322_010 0.0673927362 - - PREDICTED: uncharacterized protein LOC105632322 [Jatropha curcas]
3 Hb_000860_030 0.1084821273 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000897_010 0.1209221069 - - hypothetical protein JCGZ_13196 [Jatropha curcas]
5 Hb_000638_110 0.121757159 transcription factor TF Family: NAC hypothetical protein POPTR_0007s04250g [Populus trichocarpa]
6 Hb_005245_030 0.1229018292 - - PREDICTED: cytochrome b561 and DOMON domain-containing protein At3g07570 [Jatropha curcas]
7 Hb_005736_110 0.130673769 transcription factor TF Family: MYB MYB transcriptional factor [Populus tremula x Populus tremuloides]
8 Hb_103632_010 0.131242062 - - triacylglycerol lipase, putative [Ricinus communis]
9 Hb_003582_010 0.1334640479 - - hypothetical protein EUGRSUZ_B026451, partial [Eucalyptus grandis]
10 Hb_004617_010 0.1337100755 - - PREDICTED: protein TRANSPARENT TESTA 12-like isoform X3 [Citrus sinensis]
11 Hb_011344_050 0.1348202485 - - PREDICTED: 21 kDa protein [Jatropha curcas]
12 Hb_000740_080 0.1353854311 - - -
13 Hb_156850_040 0.1367561303 - - PREDICTED: uncharacterized protein LOC105635251 [Jatropha curcas]
14 Hb_001775_060 0.1369201408 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000000_300 0.1418314379 - - PREDICTED: pathogenesis-related protein 5 [Jatropha curcas]
16 Hb_002837_150 0.1433938242 - - hypothetical protein EUGRSUZ_L00324 [Eucalyptus grandis]
17 Hb_000705_070 0.1442501387 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002768_040 0.1445040604 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001296_010 0.1455638257 - - conserved hypothetical protein [Ricinus communis]
20 Hb_007403_100 0.1459281561 - - PREDICTED: probable purple acid phosphatase 20 [Jatropha curcas]

Gene co-expression network

sample Hb_022597_010 Hb_022597_010 Hb_001322_010 Hb_001322_010 Hb_022597_010--Hb_001322_010 Hb_000860_030 Hb_000860_030 Hb_022597_010--Hb_000860_030 Hb_000897_010 Hb_000897_010 Hb_022597_010--Hb_000897_010 Hb_000638_110 Hb_000638_110 Hb_022597_010--Hb_000638_110 Hb_005245_030 Hb_005245_030 Hb_022597_010--Hb_005245_030 Hb_005736_110 Hb_005736_110 Hb_022597_010--Hb_005736_110 Hb_001322_010--Hb_000860_030 Hb_000705_070 Hb_000705_070 Hb_001322_010--Hb_000705_070 Hb_156850_040 Hb_156850_040 Hb_001322_010--Hb_156850_040 Hb_001322_010--Hb_000638_110 Hb_000740_080 Hb_000740_080 Hb_001322_010--Hb_000740_080 Hb_000860_030--Hb_000705_070 Hb_001255_030 Hb_001255_030 Hb_000860_030--Hb_001255_030 Hb_000860_030--Hb_156850_040 Hb_000172_150 Hb_000172_150 Hb_000860_030--Hb_000172_150 Hb_007403_100 Hb_007403_100 Hb_000897_010--Hb_007403_100 Hb_000897_010--Hb_000740_080 Hb_002768_040 Hb_002768_040 Hb_000897_010--Hb_002768_040 Hb_000149_020 Hb_000149_020 Hb_000897_010--Hb_000149_020 Hb_000352_360 Hb_000352_360 Hb_000897_010--Hb_000352_360 Hb_002007_330 Hb_002007_330 Hb_000897_010--Hb_002007_330 Hb_001141_010 Hb_001141_010 Hb_000638_110--Hb_001141_010 Hb_103632_010 Hb_103632_010 Hb_000638_110--Hb_103632_010 Hb_002835_120 Hb_002835_120 Hb_000638_110--Hb_002835_120 Hb_004757_040 Hb_004757_040 Hb_000638_110--Hb_004757_040 Hb_002837_150 Hb_002837_150 Hb_000638_110--Hb_002837_150 Hb_016120_030 Hb_016120_030 Hb_005245_030--Hb_016120_030 Hb_005373_030 Hb_005373_030 Hb_005245_030--Hb_005373_030 Hb_002999_010 Hb_002999_010 Hb_005245_030--Hb_002999_010 Hb_004031_060 Hb_004031_060 Hb_005245_030--Hb_004031_060 Hb_004617_010 Hb_004617_010 Hb_005245_030--Hb_004617_010 Hb_005736_110--Hb_002835_120 Hb_006618_100 Hb_006618_100 Hb_005736_110--Hb_006618_100 Hb_145975_010 Hb_145975_010 Hb_005736_110--Hb_145975_010 Hb_011344_050 Hb_011344_050 Hb_005736_110--Hb_011344_050 Hb_005736_110--Hb_103632_010 Hb_000367_320 Hb_000367_320 Hb_005736_110--Hb_000367_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0773625 2.48355 0.613861 15.7647 0.189334 0.0244074
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0732752 1.56877 1.05874

CAGE analysis