Hb_022693_020

Information

Type -
Description -
Location Contig22693: 32521-35850
Sequence    

Annotation

kegg
ID rcu:RCOM_0867160
description pectin acetylesterase, putative
nr
ID XP_002519911.1
description pectin acetylesterase, putative [Ricinus communis]
swissprot
ID Q6DBP4
description Pectin acetylesterase 8 OS=Arabidopsis thaliana GN=PAE8 PE=2 SV=1
trembl
ID B9S1P6
description Pectin acetylesterase, putative OS=Ricinus communis GN=RCOM_0867160 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23543: 36134-36534 , PASA_asmbl_23544: 34420-36566
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_022693_020 0.0 - - pectin acetylesterase, putative [Ricinus communis]
2 Hb_000679_320 0.1191891231 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105136146 [Populus euphratica]
3 Hb_003018_150 0.1218624868 - - PREDICTED: uncharacterized protein LOC105628869 [Jatropha curcas]
4 Hb_009393_140 0.1222243763 - - PREDICTED: uncharacterized protein LOC105638053 isoform X1 [Jatropha curcas]
5 Hb_000359_160 0.1227776273 - - PREDICTED: protein CAJ1 [Jatropha curcas]
6 Hb_001541_280 0.1234138919 - - phosphate transporter [Manihot esculenta]
7 Hb_020141_030 0.125281452 - - solanesyl diphosphate synthase, putative [Ricinus communis]
8 Hb_000723_320 0.1310004899 - - PREDICTED: putative cyclic nucleotide-gated ion channel 15 [Jatropha curcas]
9 Hb_001014_020 0.1381213153 - - gene GA family protein [Populus trichocarpa]
10 Hb_000208_270 0.1399538359 - - PREDICTED: malate dehydrogenase [NADP], chloroplastic [Jatropha curcas]
11 Hb_002814_010 0.1400723133 - - PREDICTED: adenylate kinase 5, chloroplastic [Jatropha curcas]
12 Hb_004934_130 0.1419031865 - - 12-oxophytodienoate reductase 2 isoform 1 [Theobroma cacao]
13 Hb_005914_160 0.1448263837 - - PREDICTED: protein PROTON GRADIENT REGULATION 5, chloroplastic [Jatropha curcas]
14 Hb_000847_030 0.1456216553 - - PREDICTED: asparagine--tRNA ligase, cytoplasmic 2 [Jatropha curcas]
15 Hb_002783_030 0.146385592 - - PREDICTED: receptor protein kinase CLAVATA1 [Jatropha curcas]
16 Hb_003058_170 0.1484498071 - - PREDICTED: F-box protein At2g26850 isoform X1 [Jatropha curcas]
17 Hb_000116_530 0.1502838269 rubber biosynthesis Gene Name: Hydroxymethylglutaryl coenzyme A reductase RecName: Full=3-hydroxy-3-methylglutaryl-coenzyme A reductase 3; Short=HMG-CoA reductase 3 [Hevea brasiliensis]
18 Hb_004979_050 0.1504249359 - - hypothetical protein JCGZ_23771 [Jatropha curcas]
19 Hb_000538_300 0.1529543975 - - PREDICTED: WAT1-related protein At3g02690, chloroplastic [Jatropha curcas]
20 Hb_001999_070 0.1531843269 - - PREDICTED: ammonium transporter 1 member 3 [Jatropha curcas]

Gene co-expression network

sample Hb_022693_020 Hb_022693_020 Hb_000679_320 Hb_000679_320 Hb_022693_020--Hb_000679_320 Hb_003018_150 Hb_003018_150 Hb_022693_020--Hb_003018_150 Hb_009393_140 Hb_009393_140 Hb_022693_020--Hb_009393_140 Hb_000359_160 Hb_000359_160 Hb_022693_020--Hb_000359_160 Hb_001541_280 Hb_001541_280 Hb_022693_020--Hb_001541_280 Hb_020141_030 Hb_020141_030 Hb_022693_020--Hb_020141_030 Hb_004979_050 Hb_004979_050 Hb_000679_320--Hb_004979_050 Hb_000679_320--Hb_009393_140 Hb_006472_040 Hb_006472_040 Hb_000679_320--Hb_006472_040 Hb_000679_320--Hb_000359_160 Hb_000107_540 Hb_000107_540 Hb_000679_320--Hb_000107_540 Hb_008112_020 Hb_008112_020 Hb_000679_320--Hb_008112_020 Hb_000847_030 Hb_000847_030 Hb_003018_150--Hb_000847_030 Hb_005914_160 Hb_005914_160 Hb_003018_150--Hb_005914_160 Hb_001210_060 Hb_001210_060 Hb_003018_150--Hb_001210_060 Hb_003058_170 Hb_003058_170 Hb_003018_150--Hb_003058_170 Hb_003018_150--Hb_020141_030 Hb_000618_110 Hb_000618_110 Hb_003018_150--Hb_000618_110 Hb_000252_180 Hb_000252_180 Hb_009393_140--Hb_000252_180 Hb_009393_140--Hb_006472_040 Hb_009393_140--Hb_000359_160 Hb_009393_140--Hb_004979_050 Hb_000359_160--Hb_004979_050 Hb_000723_320 Hb_000723_320 Hb_000359_160--Hb_000723_320 Hb_000359_070 Hb_000359_070 Hb_000359_160--Hb_000359_070 Hb_002814_010 Hb_002814_010 Hb_000359_160--Hb_002814_010 Hb_000270_640 Hb_000270_640 Hb_001541_280--Hb_000270_640 Hb_001541_280--Hb_000847_030 Hb_001541_280--Hb_002814_010 Hb_001541_280--Hb_020141_030 Hb_000140_460 Hb_000140_460 Hb_001541_280--Hb_000140_460 Hb_000002_300 Hb_000002_300 Hb_001541_280--Hb_000002_300 Hb_000208_270 Hb_000208_270 Hb_020141_030--Hb_000208_270 Hb_000787_210 Hb_000787_210 Hb_020141_030--Hb_000787_210 Hb_020141_030--Hb_002814_010 Hb_020141_030--Hb_003058_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0926612 1.97175 3.75797 4.8333 0.0485754 0.0474565
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.958323 0.405932 0.054151 0.730715 13.2582

CAGE analysis