Hb_022693_080

Information

Type -
Description -
Location Contig22693: 189402-195478
Sequence    

Annotation

kegg
ID pop:POPTR_0001s01040g
description hypothetical protein
nr
ID XP_012070478.1
description PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4 [Jatropha curcas]
swissprot
ID F4I9E1
description Protein NUCLEAR FUSION DEFECTIVE 4 OS=Arabidopsis thaliana GN=NFD4 PE=3 SV=1
trembl
ID A0A067L5H7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02740 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23562: 189650-193878 , PASA_asmbl_23563: 193486-193749 , PASA_asmbl_23564: 194557-195006
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_022693_080 0.0 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4 [Jatropha curcas]
2 Hb_004117_320 0.087690673 - - PREDICTED: probable serine/threonine-protein kinase WNK5 [Jatropha curcas]
3 Hb_005867_050 0.0942016508 - - PREDICTED: protein ECERIFERUM 1 [Jatropha curcas]
4 Hb_000270_640 0.1011889158 - - hypothetical protein POPTR_0012s07880g [Populus trichocarpa]
5 Hb_004979_080 0.1042572769 - - kinase, putative [Ricinus communis]
6 Hb_004291_050 0.1124248174 - - hypothetical protein POPTR_0018s09540g [Populus trichocarpa]
7 Hb_019863_050 0.1132195314 - - PREDICTED: uncharacterized protein LOC103343426 [Prunus mume]
8 Hb_002636_070 0.1136894851 - - PREDICTED: putative U-box domain-containing protein 42 [Jatropha curcas]
9 Hb_002226_090 0.1188285136 - - Stachyose synthase precursor, putative [Ricinus communis]
10 Hb_010402_040 0.1206774667 - - hypothetical protein JCGZ_21227 [Jatropha curcas]
11 Hb_027337_130 0.1207182016 - - PREDICTED: non-functional NADPH-dependent codeinone reductase 2-like [Jatropha curcas]
12 Hb_001541_280 0.1226407476 - - phosphate transporter [Manihot esculenta]
13 Hb_020141_030 0.1234115211 - - solanesyl diphosphate synthase, putative [Ricinus communis]
14 Hb_033363_030 0.1236266807 - - PREDICTED: serine/threonine-protein kinase STN7, chloroplastic [Jatropha curcas]
15 Hb_000237_170 0.1249702169 transcription factor TF Family: HB PREDICTED: BEL1-like homeodomain protein 6 [Jatropha curcas]
16 Hb_119600_030 0.1250775994 - - PREDICTED: uncharacterized protein LOC105635187 [Jatropha curcas]
17 Hb_000644_010 0.1258654752 - - PREDICTED: putative disease resistance protein RGA1 isoform X2 [Jatropha curcas]
18 Hb_000373_010 0.1286323132 - - ATP binding protein, putative [Ricinus communis]
19 Hb_000787_210 0.1301878952 - - conserved hypothetical protein [Ricinus communis]
20 Hb_096224_050 0.1302054394 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g31250 [Jatropha curcas]

Gene co-expression network

sample Hb_022693_080 Hb_022693_080 Hb_004117_320 Hb_004117_320 Hb_022693_080--Hb_004117_320 Hb_005867_050 Hb_005867_050 Hb_022693_080--Hb_005867_050 Hb_000270_640 Hb_000270_640 Hb_022693_080--Hb_000270_640 Hb_004979_080 Hb_004979_080 Hb_022693_080--Hb_004979_080 Hb_004291_050 Hb_004291_050 Hb_022693_080--Hb_004291_050 Hb_019863_050 Hb_019863_050 Hb_022693_080--Hb_019863_050 Hb_010402_040 Hb_010402_040 Hb_004117_320--Hb_010402_040 Hb_004117_320--Hb_005867_050 Hb_002226_090 Hb_002226_090 Hb_004117_320--Hb_002226_090 Hb_004117_320--Hb_004979_080 Hb_004117_320--Hb_004291_050 Hb_005867_050--Hb_010402_040 Hb_005867_050--Hb_002226_090 Hb_005867_050--Hb_004979_080 Hb_000061_440 Hb_000061_440 Hb_005867_050--Hb_000061_440 Hb_000705_040 Hb_000705_040 Hb_000270_640--Hb_000705_040 Hb_001541_280 Hb_001541_280 Hb_000270_640--Hb_001541_280 Hb_000968_010 Hb_000968_010 Hb_000270_640--Hb_000968_010 Hb_000373_010 Hb_000373_010 Hb_000270_640--Hb_000373_010 Hb_002636_070 Hb_002636_070 Hb_000270_640--Hb_002636_070 Hb_004979_070 Hb_004979_070 Hb_000270_640--Hb_004979_070 Hb_096224_050 Hb_096224_050 Hb_004979_080--Hb_096224_050 Hb_000644_010 Hb_000644_010 Hb_004979_080--Hb_000644_010 Hb_004979_080--Hb_004979_070 Hb_033363_030 Hb_033363_030 Hb_004979_080--Hb_033363_030 Hb_007904_110 Hb_007904_110 Hb_004979_080--Hb_007904_110 Hb_000668_180 Hb_000668_180 Hb_004979_080--Hb_000668_180 Hb_004291_050--Hb_004979_080 Hb_004291_050--Hb_004979_070 Hb_000011_440 Hb_000011_440 Hb_004291_050--Hb_000011_440 Hb_004291_050--Hb_007904_110 Hb_004291_050--Hb_000644_010 Hb_027337_130 Hb_027337_130 Hb_004291_050--Hb_027337_130 Hb_011028_030 Hb_011028_030 Hb_019863_050--Hb_011028_030 Hb_019863_050--Hb_033363_030 Hb_002211_020 Hb_002211_020 Hb_019863_050--Hb_002211_020 Hb_000072_240 Hb_000072_240 Hb_019863_050--Hb_000072_240 Hb_046739_010 Hb_046739_010 Hb_019863_050--Hb_046739_010 Hb_000031_320 Hb_000031_320 Hb_019863_050--Hb_000031_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0909539 6.38442 7.03616 6.04669 0.437599 0.206567
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0894793 0.0528039 0.100154 1.40741 21.2078

CAGE analysis