Hb_022693_120

Information

Type -
Description -
Location Contig22693: 246783-255158
Sequence    

Annotation

kegg
ID rcu:RCOM_0385670
description serine/threonine-protein kinase rio2, putative (EC:2.7.11.1)
nr
ID XP_012081902.1
description PREDICTED: serine/threonine-protein kinase rio2-like [Jatropha curcas]
swissprot
ID Q54T05
description Serine/threonine-protein kinase rio2 OS=Dictyostelium discoideum GN=rio2 PE=3 SV=1
trembl
ID A0A067JZY4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19249 PE=4 SV=1
Gene Ontology
ID GO:0004674
description serine threonine-protein kinase rio2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23569: 247254-255140
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_022693_120 0.0 - - PREDICTED: serine/threonine-protein kinase rio2-like [Jatropha curcas]
2 Hb_000207_310 0.0739243954 - - PREDICTED: uncharacterized protein LOC105633932 [Jatropha curcas]
3 Hb_023386_040 0.0757589009 - - PREDICTED: chaperone protein dnaJ 13-like [Populus euphratica]
4 Hb_002205_040 0.0795149976 - - nucleic acid binding protein, putative [Ricinus communis]
5 Hb_000768_110 0.0820369346 - - PREDICTED: chromo domain-containing protein LHP1 isoform X1 [Jatropha curcas]
6 Hb_007026_030 0.0840436017 - - rubisco subunit binding-protein alpha subunit, ruba, putative [Ricinus communis]
7 Hb_009222_010 0.0869222853 - - WD-repeat protein, putative [Ricinus communis]
8 Hb_001766_150 0.0880108492 - - PREDICTED: 40S ribosomal protein S6 [Jatropha curcas]
9 Hb_156973_010 0.0884640707 - - conserved hypothetical protein [Ricinus communis]
10 Hb_010193_050 0.090016786 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002044_060 0.0901141005 - - elongation factor ts, putative [Ricinus communis]
12 Hb_000976_320 0.0901674462 - - UPF0061 protein azo1574 [Morus notabilis]
13 Hb_000189_340 0.0902237762 - - PREDICTED: 40S ribosomal protein S3a-1 [Jatropha curcas]
14 Hb_000029_130 0.0902277131 - - PREDICTED: ruvB-like protein 1 isoform X2 [Jatropha curcas]
15 Hb_000120_920 0.0908211262 - - poly(A) polymerase, putative [Ricinus communis]
16 Hb_178968_100 0.0916522604 - - PREDICTED: putative glucose-6-phosphate 1-epimerase isoform X1 [Populus euphratica]
17 Hb_000913_050 0.0930743618 - - hypothetical protein JCGZ_17329 [Jatropha curcas]
18 Hb_001828_160 0.0934183499 - - hypothetical protein F775_31105 [Aegilops tauschii]
19 Hb_020000_020 0.0941918497 - - Troponin C, skeletal muscle, putative [Ricinus communis]
20 Hb_004370_030 0.0944844798 - - PREDICTED: RNA-binding protein 34 [Jatropha curcas]

Gene co-expression network

sample Hb_022693_120 Hb_022693_120 Hb_000207_310 Hb_000207_310 Hb_022693_120--Hb_000207_310 Hb_023386_040 Hb_023386_040 Hb_022693_120--Hb_023386_040 Hb_002205_040 Hb_002205_040 Hb_022693_120--Hb_002205_040 Hb_000768_110 Hb_000768_110 Hb_022693_120--Hb_000768_110 Hb_007026_030 Hb_007026_030 Hb_022693_120--Hb_007026_030 Hb_009222_010 Hb_009222_010 Hb_022693_120--Hb_009222_010 Hb_001828_160 Hb_001828_160 Hb_000207_310--Hb_001828_160 Hb_000116_180 Hb_000116_180 Hb_000207_310--Hb_000116_180 Hb_002890_020 Hb_002890_020 Hb_000207_310--Hb_002890_020 Hb_000913_050 Hb_000913_050 Hb_000207_310--Hb_000913_050 Hb_000029_130 Hb_000029_130 Hb_000207_310--Hb_000029_130 Hb_108216_040 Hb_108216_040 Hb_000207_310--Hb_108216_040 Hb_154745_010 Hb_154745_010 Hb_023386_040--Hb_154745_010 Hb_000926_190 Hb_000926_190 Hb_023386_040--Hb_000926_190 Hb_006252_040 Hb_006252_040 Hb_023386_040--Hb_006252_040 Hb_005914_060 Hb_005914_060 Hb_023386_040--Hb_005914_060 Hb_000179_030 Hb_000179_030 Hb_023386_040--Hb_000179_030 Hb_003952_070 Hb_003952_070 Hb_023386_040--Hb_003952_070 Hb_002205_040--Hb_023386_040 Hb_002205_040--Hb_002890_020 Hb_001014_050 Hb_001014_050 Hb_002205_040--Hb_001014_050 Hb_002205_040--Hb_000926_190 Hb_002205_040--Hb_000207_310 Hb_000567_010 Hb_000567_010 Hb_000768_110--Hb_000567_010 Hb_008159_020 Hb_008159_020 Hb_000768_110--Hb_008159_020 Hb_000160_040 Hb_000160_040 Hb_000768_110--Hb_000160_040 Hb_010193_050 Hb_010193_050 Hb_000768_110--Hb_010193_050 Hb_000768_110--Hb_005914_060 Hb_000173_510 Hb_000173_510 Hb_000768_110--Hb_000173_510 Hb_000794_050 Hb_000794_050 Hb_007026_030--Hb_000794_050 Hb_178968_100 Hb_178968_100 Hb_007026_030--Hb_178968_100 Hb_003044_100 Hb_003044_100 Hb_007026_030--Hb_003044_100 Hb_001575_100 Hb_001575_100 Hb_007026_030--Hb_001575_100 Hb_000368_020 Hb_000368_020 Hb_007026_030--Hb_000368_020 Hb_012098_110 Hb_012098_110 Hb_007026_030--Hb_012098_110 Hb_000785_030 Hb_000785_030 Hb_009222_010--Hb_000785_030 Hb_011848_010 Hb_011848_010 Hb_009222_010--Hb_011848_010 Hb_000189_340 Hb_000189_340 Hb_009222_010--Hb_000189_340 Hb_000059_140 Hb_000059_140 Hb_009222_010--Hb_000059_140 Hb_011942_080 Hb_011942_080 Hb_009222_010--Hb_011942_080 Hb_003467_010 Hb_003467_010 Hb_009222_010--Hb_003467_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.7132 6.84629 7.18405 6.48956 14.6444 20.8416
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.76839 12.9279 6.55218 10.2925 6.54195

CAGE analysis