Hb_022693_140

Information

Type -
Description -
Location Contig22693: 278367-287187
Sequence    

Annotation

kegg
ID pop:POPTR_0003s10420g
description POPTRDRAFT_1073806; hypothetical protein
nr
ID XP_012070483.1
description PREDICTED: uncharacterized protein LOC105632654 isoform X1 [Jatropha curcas]
swissprot
ID P31133
description Putrescine-binding periplasmic protein OS=Escherichia coli (strain K12) GN=potF PE=1 SV=3
trembl
ID A0A067L6P7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02749 PE=4 SV=1
Gene Ontology
ID GO:0009941
description putrescine-binding periplasmic protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23577: 278543-282228 , PASA_asmbl_23578: 283090-285927 , PASA_asmbl_23579: 286536-286909
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_022693_140 0.0 - - PREDICTED: uncharacterized protein LOC105632654 isoform X1 [Jatropha curcas]
2 Hb_012022_150 0.0499162246 - - PREDICTED: protein root UVB sensitive 5 [Jatropha curcas]
3 Hb_000804_040 0.0626515078 - - protein with unknown function [Ricinus communis]
4 Hb_000224_160 0.0684428492 - - PREDICTED: phenylalanine--tRNA ligase, chloroplastic/mitochondrial [Jatropha curcas]
5 Hb_029879_010 0.0749521324 - - ribosomal pseudouridine synthase, putative [Ricinus communis]
6 Hb_000184_170 0.0773882533 - - hypothetical protein RCOM_1213430 [Ricinus communis]
7 Hb_000137_040 0.0786610407 - - aspartyl-tRNA synthetase, putative [Ricinus communis]
8 Hb_002013_020 0.0800000431 - - PREDICTED: uncharacterized protein LOC105641613 [Jatropha curcas]
9 Hb_002893_070 0.0804797702 - - PREDICTED: zeaxanthin epoxidase, chloroplastic [Jatropha curcas]
10 Hb_002592_060 0.0829780675 - - conserved hypothetical protein [Ricinus communis]
11 Hb_003513_010 0.0830436562 - - Structural maintenance of chromosome 1 protein, putative [Ricinus communis]
12 Hb_000723_040 0.0831906729 - - PREDICTED: histidine--tRNA ligase, cytoplasmic [Jatropha curcas]
13 Hb_003939_050 0.0854516214 - - protein with unknown function [Ricinus communis]
14 Hb_000331_260 0.0857313316 - - PREDICTED: WD repeat-containing protein 74 isoform X2 [Jatropha curcas]
15 Hb_000329_320 0.0858923816 - - PREDICTED: DNA ligase 1 [Jatropha curcas]
16 Hb_065500_060 0.085954626 - - PREDICTED: uncharacterized protein LOC105633723 [Jatropha curcas]
17 Hb_000753_240 0.0860763492 - - PREDICTED: ADP,ATP carrier protein ER-ANT1 [Jatropha curcas]
18 Hb_000080_120 0.0863114622 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62350-like [Jatropha curcas]
19 Hb_000465_090 0.0863853929 - - PREDICTED: uncharacterized protein LOC105632289 [Jatropha curcas]
20 Hb_011716_130 0.0864002857 - - PREDICTED: probable acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase, mitochondrial isoform X5 [Populus euphratica]

Gene co-expression network

sample Hb_022693_140 Hb_022693_140 Hb_012022_150 Hb_012022_150 Hb_022693_140--Hb_012022_150 Hb_000804_040 Hb_000804_040 Hb_022693_140--Hb_000804_040 Hb_000224_160 Hb_000224_160 Hb_022693_140--Hb_000224_160 Hb_029879_010 Hb_029879_010 Hb_022693_140--Hb_029879_010 Hb_000184_170 Hb_000184_170 Hb_022693_140--Hb_000184_170 Hb_000137_040 Hb_000137_040 Hb_022693_140--Hb_000137_040 Hb_012022_150--Hb_000224_160 Hb_002163_040 Hb_002163_040 Hb_012022_150--Hb_002163_040 Hb_003029_070 Hb_003029_070 Hb_012022_150--Hb_003029_070 Hb_012022_150--Hb_000804_040 Hb_000753_240 Hb_000753_240 Hb_012022_150--Hb_000753_240 Hb_000205_190 Hb_000205_190 Hb_000804_040--Hb_000205_190 Hb_004970_190 Hb_004970_190 Hb_000804_040--Hb_004970_190 Hb_001322_140 Hb_001322_140 Hb_000804_040--Hb_001322_140 Hb_000804_040--Hb_000753_240 Hb_001584_200 Hb_001584_200 Hb_000224_160--Hb_001584_200 Hb_011716_130 Hb_011716_130 Hb_000224_160--Hb_011716_130 Hb_000224_160--Hb_002163_040 Hb_000224_160--Hb_000184_170 Hb_003939_050 Hb_003939_050 Hb_029879_010--Hb_003939_050 Hb_030736_100 Hb_030736_100 Hb_029879_010--Hb_030736_100 Hb_000883_020 Hb_000883_020 Hb_029879_010--Hb_000883_020 Hb_002592_060 Hb_002592_060 Hb_029879_010--Hb_002592_060 Hb_063716_100 Hb_063716_100 Hb_029879_010--Hb_063716_100 Hb_003153_010 Hb_003153_010 Hb_000184_170--Hb_003153_010 Hb_000346_060 Hb_000346_060 Hb_000184_170--Hb_000346_060 Hb_001700_010 Hb_001700_010 Hb_000184_170--Hb_001700_010 Hb_008959_010 Hb_008959_010 Hb_000184_170--Hb_008959_010 Hb_001279_030 Hb_001279_030 Hb_000184_170--Hb_001279_030 Hb_003513_010 Hb_003513_010 Hb_000137_040--Hb_003513_010 Hb_002013_020 Hb_002013_020 Hb_000137_040--Hb_002013_020 Hb_005496_140 Hb_005496_140 Hb_000137_040--Hb_005496_140 Hb_001322_110 Hb_001322_110 Hb_000137_040--Hb_001322_110 Hb_003416_010 Hb_003416_010 Hb_000137_040--Hb_003416_010 Hb_000866_260 Hb_000866_260 Hb_000137_040--Hb_000866_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.38264 2.33758 6.53506 3.41694 5.77508 6.51082
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.58351 6.59884 5.26431 4.33017 7.48395

CAGE analysis