Hb_022749_030

Information

Type -
Description -
Location Contig22749: 39852-40637
Sequence    

Annotation

kegg
ID bvg:104893789
description uncharacterized LOC104893789
nr
ID CCA66039.1
description hypothetical protein [Beta vulgaris subsp. vulgaris]
swissprot
ID -
description -
trembl
ID F4NCI6
description Uncharacterized protein OS=Beta vulgaris subsp. vulgaris PE=4 SV=1
Gene Ontology
ID GO:0005488
description kinesin-4 -like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_022749_030 0.0 - - hypothetical protein [Beta vulgaris subsp. vulgaris]
2 Hb_003540_140 0.1837912363 - - PREDICTED: choline transporter-like protein 2 [Jatropha curcas]
3 Hb_004307_040 0.1885367427 - - -
4 Hb_000329_540 0.1906196441 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 7 [Jatropha curcas]
5 Hb_000156_030 0.1914264958 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000018_160 0.1919612312 - - nitrate transporter, putative [Ricinus communis]
7 Hb_008147_030 0.1972982136 - - PREDICTED: uncharacterized protein LOC105646808 [Jatropha curcas]
8 Hb_005568_070 0.1977910331 - - PREDICTED: protein NRT1/ PTR FAMILY 2.6-like [Gossypium raimondii]
9 Hb_002897_040 0.198285454 - - PREDICTED: LOW QUALITY PROTEIN: protein NETWORKED 4A [Jatropha curcas]
10 Hb_061256_030 0.1991508288 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
11 Hb_004102_130 0.2008008724 - - conserved hypothetical protein [Ricinus communis]
12 Hb_031862_170 0.2013360756 - - immunophilin, putative [Ricinus communis]
13 Hb_000005_320 0.2081852911 - - conserved hypothetical protein [Ricinus communis]
14 Hb_040506_010 0.2082812406 - - protein binding protein, putative [Ricinus communis]
15 Hb_002769_040 0.2084128474 - - farnesyl-diphosphate farnesyltransferase, putative [Ricinus communis]
16 Hb_000211_080 0.2088539452 - - PREDICTED: probable isoleucine--tRNA ligase, cytoplasmic [Jatropha curcas]
17 Hb_006960_020 0.2101778469 - - PREDICTED: uncharacterized protein LOC102617255 [Citrus sinensis]
18 Hb_003673_020 0.2110260454 - - hypothetical protein JCGZ_20998 [Jatropha curcas]
19 Hb_003226_170 0.21139465 - - PREDICTED: poly [ADP-ribose] polymerase 2 isoform X1 [Jatropha curcas]
20 Hb_002759_130 0.2116131067 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_022749_030 Hb_022749_030 Hb_003540_140 Hb_003540_140 Hb_022749_030--Hb_003540_140 Hb_004307_040 Hb_004307_040 Hb_022749_030--Hb_004307_040 Hb_000329_540 Hb_000329_540 Hb_022749_030--Hb_000329_540 Hb_000156_030 Hb_000156_030 Hb_022749_030--Hb_000156_030 Hb_000018_160 Hb_000018_160 Hb_022749_030--Hb_000018_160 Hb_008147_030 Hb_008147_030 Hb_022749_030--Hb_008147_030 Hb_002769_040 Hb_002769_040 Hb_003540_140--Hb_002769_040 Hb_000441_230 Hb_000441_230 Hb_003540_140--Hb_000441_230 Hb_003540_140--Hb_000329_540 Hb_003540_140--Hb_000156_030 Hb_061256_030 Hb_061256_030 Hb_003540_140--Hb_061256_030 Hb_003226_170 Hb_003226_170 Hb_003540_140--Hb_003226_170 Hb_010290_020 Hb_010290_020 Hb_004307_040--Hb_010290_020 Hb_000580_060 Hb_000580_060 Hb_004307_040--Hb_000580_060 Hb_005568_070 Hb_005568_070 Hb_004307_040--Hb_005568_070 Hb_027998_030 Hb_027998_030 Hb_004307_040--Hb_027998_030 Hb_004307_040--Hb_003540_140 Hb_004307_040--Hb_000329_540 Hb_000329_540--Hb_000441_230 Hb_000329_540--Hb_000156_030 Hb_000329_540--Hb_005568_070 Hb_000175_530 Hb_000175_530 Hb_000329_540--Hb_000175_530 Hb_000329_540--Hb_000580_060 Hb_000161_100 Hb_000161_100 Hb_000156_030--Hb_000161_100 Hb_004032_460 Hb_004032_460 Hb_000156_030--Hb_004032_460 Hb_000156_030--Hb_000441_230 Hb_002897_040 Hb_002897_040 Hb_000156_030--Hb_002897_040 Hb_000211_080 Hb_000211_080 Hb_000018_160--Hb_000211_080 Hb_035360_010 Hb_035360_010 Hb_000018_160--Hb_035360_010 Hb_000018_160--Hb_005568_070 Hb_000619_070 Hb_000619_070 Hb_000018_160--Hb_000619_070 Hb_000544_120 Hb_000544_120 Hb_000018_160--Hb_000544_120 Hb_000018_160--Hb_000161_100 Hb_000548_010 Hb_000548_010 Hb_008147_030--Hb_000548_010 Hb_001268_230 Hb_001268_230 Hb_008147_030--Hb_001268_230 Hb_141838_010 Hb_141838_010 Hb_008147_030--Hb_141838_010 Hb_003320_030 Hb_003320_030 Hb_008147_030--Hb_003320_030 Hb_031862_170 Hb_031862_170 Hb_008147_030--Hb_031862_170 Hb_004460_020 Hb_004460_020 Hb_008147_030--Hb_004460_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.429634 0.0251769 0.0718947 0 0.408109 0.359171
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0690906 0 0.0981059 0.0220021 0

CAGE analysis