Hb_022790_030

Information

Type -
Description -
Location Contig22790: 7177-7667
Sequence    

Annotation

kegg
ID rcu:RCOM_1326590
description Calmodulin, putative (EC:1.3.1.74)
nr
ID XP_012070221.1
description PREDICTED: probable calcium-binding protein CML18 [Jatropha curcas]
swissprot
ID Q9M8U1
description Probable calcium-binding protein CML18 OS=Arabidopsis thaliana GN=CML18 PE=1 SV=1
trembl
ID A0A067L4T3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02535 PE=4 SV=1
Gene Ontology
ID GO:0005509
description probable calcium-binding protein cml18

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_022790_030 0.0 - - PREDICTED: probable calcium-binding protein CML18 [Jatropha curcas]
2 Hb_007809_070 0.0191299488 - - conserved hypothetical protein [Ricinus communis]
3 Hb_047735_010 0.0955679209 - - DNA/RNA polymerases superfamily protein, putative [Theobroma cacao]
4 Hb_155103_010 0.1500560427 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
5 Hb_003589_010 0.1533791754 - - -
6 Hb_008948_030 0.1555270674 - - hypothetical protein RCOM_0224470 [Ricinus communis]
7 Hb_003878_160 0.1595193189 - - conserved hypothetical protein [Ricinus communis]
8 Hb_181132_010 0.1738460643 - - -
9 Hb_000757_080 0.1772930402 - - vacuolar ATP synthase subunit G plant, putative [Ricinus communis]
10 Hb_100821_010 0.1889605494 - - hypothetical protein JCGZ_01613 [Jatropha curcas]
11 Hb_002928_080 0.1941564349 - - PREDICTED: pentatricopeptide repeat-containing protein At5g42310, mitochondrial [Jatropha curcas]
12 Hb_002392_060 0.1947899337 - - gag/pol protein [Bryonia dioica]
13 Hb_001433_010 0.2225408975 - - -
14 Hb_020805_020 0.2256832605 - - -
15 Hb_002240_030 0.2350153943 - - -
16 Hb_000046_130 0.238979767 - - Peroxidase 27 precursor, putative [Ricinus communis]
17 Hb_002495_020 0.2997930916 - - hypothetical protein EUGRSUZ_A02403, partial [Eucalyptus grandis]
18 Hb_002235_090 0.3224729463 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
19 Hb_001488_050 0.3227922348 transcription factor TF Family: NAC PREDICTED: NAC transcription factor 29-like [Jatropha curcas]
20 Hb_000594_170 0.333291836 - - -

Gene co-expression network

sample Hb_022790_030 Hb_022790_030 Hb_007809_070 Hb_007809_070 Hb_022790_030--Hb_007809_070 Hb_047735_010 Hb_047735_010 Hb_022790_030--Hb_047735_010 Hb_155103_010 Hb_155103_010 Hb_022790_030--Hb_155103_010 Hb_003589_010 Hb_003589_010 Hb_022790_030--Hb_003589_010 Hb_008948_030 Hb_008948_030 Hb_022790_030--Hb_008948_030 Hb_003878_160 Hb_003878_160 Hb_022790_030--Hb_003878_160 Hb_007809_070--Hb_047735_010 Hb_007809_070--Hb_155103_010 Hb_007809_070--Hb_003589_010 Hb_007809_070--Hb_008948_030 Hb_007809_070--Hb_003878_160 Hb_047735_010--Hb_155103_010 Hb_047735_010--Hb_003589_010 Hb_047735_010--Hb_008948_030 Hb_047735_010--Hb_003878_160 Hb_181132_010 Hb_181132_010 Hb_047735_010--Hb_181132_010 Hb_155103_010--Hb_003589_010 Hb_155103_010--Hb_008948_030 Hb_155103_010--Hb_003878_160 Hb_155103_010--Hb_181132_010 Hb_000757_080 Hb_000757_080 Hb_155103_010--Hb_000757_080 Hb_100821_010 Hb_100821_010 Hb_155103_010--Hb_100821_010 Hb_003589_010--Hb_008948_030 Hb_003589_010--Hb_003878_160 Hb_003589_010--Hb_181132_010 Hb_003589_010--Hb_000757_080 Hb_003589_010--Hb_100821_010 Hb_008948_030--Hb_003878_160 Hb_008948_030--Hb_181132_010 Hb_008948_030--Hb_000757_080 Hb_008948_030--Hb_100821_010 Hb_003878_160--Hb_181132_010 Hb_003878_160--Hb_000757_080 Hb_003878_160--Hb_100821_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0879638 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.159071 0

CAGE analysis