Hb_022793_010

Information

Type -
Description -
Location Contig22793: 2934-5995
Sequence    

Annotation

kegg
ID egr:104451368
description uncharacterized LOC104451368
nr
ID XP_009770762.1
description PREDICTED: uncharacterized protein LOC104221396 [Nicotiana sylvestris]
swissprot
ID P31843
description RNA-directed DNA polymerase homolog OS=Oenothera berteroana PE=4 SV=1
trembl
ID Q7XN91
description OSJNBa0011F23.1 protein OS=Oryza sativa subsp. japonica GN=OSJNBa0011F23.1 PE=4 SV=1
Gene Ontology
ID GO:0003676
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_022793_010 0.0 - - PREDICTED: uncharacterized protein LOC104221396 [Nicotiana sylvestris]
2 Hb_000685_090 0.120024637 - - PREDICTED: uncharacterized protein LOC105641067 [Jatropha curcas]
3 Hb_000965_010 0.1893289166 - - hypothetical protein VITISV_016917 [Vitis vinifera]
4 Hb_000495_060 0.2389093237 - - Osmotin precursor, putative [Ricinus communis]
5 Hb_187024_090 0.2913960898 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
6 Hb_003645_050 0.2931030994 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
7 Hb_000084_170 0.29406448 - - conserved hypothetical protein [Ricinus communis]
8 Hb_171693_010 0.2965648079 - - hypothetical protein JCGZ_26531 [Jatropha curcas]
9 Hb_000060_070 0.2995595316 - - hypothetical protein EUTSA_v10023188mg, partial [Eutrema salsugineum]
10 Hb_011242_070 0.3008453736 - - beta-cyanoalanine synthase [Hevea brasiliensis]
11 Hb_000280_120 0.3009707533 - - PREDICTED: uncharacterized protein LOC105643934 [Jatropha curcas]
12 Hb_138667_010 0.3029587008 - - hypothetical protein JCGZ_04974 [Jatropha curcas]
13 Hb_000243_050 0.303097776 - - ADP-ribosylation factor, putative [Ricinus communis]
14 Hb_000349_160 0.3048213651 - - PREDICTED: geraniol 8-hydroxylase-like [Citrus sinensis]
15 Hb_002498_150 0.3062711951 - - conserved hypothetical protein [Ricinus communis]
16 Hb_162086_010 0.30639367 - - PREDICTED: uncharacterized protein LOC105634453 [Jatropha curcas]
17 Hb_168909_010 0.3064043615 - - PREDICTED: uncharacterized protein LOC105640156 [Jatropha curcas]
18 Hb_000395_210 0.3075807152 - - PREDICTED: nuclear pore complex protein NUP85 [Jatropha curcas]
19 Hb_028872_040 0.3098852337 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
20 Hb_003938_100 0.3137165658 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_022793_010 Hb_022793_010 Hb_000685_090 Hb_000685_090 Hb_022793_010--Hb_000685_090 Hb_000965_010 Hb_000965_010 Hb_022793_010--Hb_000965_010 Hb_000495_060 Hb_000495_060 Hb_022793_010--Hb_000495_060 Hb_187024_090 Hb_187024_090 Hb_022793_010--Hb_187024_090 Hb_003645_050 Hb_003645_050 Hb_022793_010--Hb_003645_050 Hb_000084_170 Hb_000084_170 Hb_022793_010--Hb_000084_170 Hb_000685_090--Hb_000965_010 Hb_000685_090--Hb_000495_060 Hb_000685_090--Hb_187024_090 Hb_000685_090--Hb_000084_170 Hb_000395_210 Hb_000395_210 Hb_000685_090--Hb_000395_210 Hb_000965_010--Hb_000495_060 Hb_001596_010 Hb_001596_010 Hb_000965_010--Hb_001596_010 Hb_000965_010--Hb_187024_090 Hb_000060_070 Hb_000060_070 Hb_000965_010--Hb_000060_070 Hb_014967_010 Hb_014967_010 Hb_000495_060--Hb_014967_010 Hb_159404_010 Hb_159404_010 Hb_000495_060--Hb_159404_010 Hb_020400_010 Hb_020400_010 Hb_000495_060--Hb_020400_010 Hb_008755_020 Hb_008755_020 Hb_000495_060--Hb_008755_020 Hb_110782_010 Hb_110782_010 Hb_000495_060--Hb_110782_010 Hb_008008_020 Hb_008008_020 Hb_187024_090--Hb_008008_020 Hb_010691_010 Hb_010691_010 Hb_187024_090--Hb_010691_010 Hb_187024_090--Hb_000084_170 Hb_003645_050--Hb_000060_070 Hb_006916_180 Hb_006916_180 Hb_003645_050--Hb_006916_180 Hb_001355_050 Hb_001355_050 Hb_003645_050--Hb_001355_050 Hb_008642_050 Hb_008642_050 Hb_003645_050--Hb_008642_050 Hb_002000_120 Hb_002000_120 Hb_003645_050--Hb_002000_120 Hb_000094_050 Hb_000094_050 Hb_003645_050--Hb_000094_050 Hb_054865_080 Hb_054865_080 Hb_000084_170--Hb_054865_080 Hb_000049_240 Hb_000049_240 Hb_000084_170--Hb_000049_240 Hb_026687_030 Hb_026687_030 Hb_000084_170--Hb_026687_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0188795 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0120284 0 0.0143166 0.0256401

CAGE analysis