Hb_022832_050

Information

Type -
Description -
Location Contig22832: 18552-21447
Sequence    

Annotation

kegg
ID cit:102610347
description protein argonaute 16-like
nr
ID XP_011100478.1
description PREDICTED: protein argonaute 16 isoform X1 [Sesamum indicum]
swissprot
ID O48771
description Protein argonaute 6 OS=Arabidopsis thaliana GN=AGO6 PE=2 SV=2
trembl
ID V4U9S7
description Protein argonaute OS=Citrus clementina GN=CICLE_v10014201mg PE=3 SV=1
Gene Ontology
ID GO:0003676
description protein argonaute 16 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23784: 18893-19475 , PASA_asmbl_23785: 18820-19485
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_022832_050 0.0 - - PREDICTED: protein argonaute 16 isoform X1 [Sesamum indicum]
2 Hb_005483_040 0.0820992905 - - PREDICTED: mechanosensitive ion channel protein 10-like [Jatropha curcas]
3 Hb_000883_080 0.0872977305 - - ankyrin repeat-containing protein, putative [Ricinus communis]
4 Hb_018487_040 0.0930595463 - - PREDICTED: 3-ketoacyl-CoA synthase 6 [Jatropha curcas]
5 Hb_002250_040 0.0931365794 - - PREDICTED: transcription repressor OFP17 [Jatropha curcas]
6 Hb_002149_060 0.0971294329 - - catalytic, putative [Ricinus communis]
7 Hb_018202_040 0.101213419 - - PREDICTED: phosphoenolpyruvate/phosphate translocator 2, chloroplastic-like [Jatropha curcas]
8 Hb_169492_010 0.1039642364 - - PREDICTED: expansin-like B1 [Jatropha curcas]
9 Hb_001104_070 0.1058792383 - - hypothetical protein SORBIDRAFT_10g024640 [Sorghum bicolor]
10 Hb_001951_050 0.1068860267 - - chlorophyll A/B binding protein, putative [Ricinus communis]
11 Hb_002675_220 0.1074059747 - - PREDICTED: probable pyridoxal biosynthesis protein PDX1.2 [Populus euphratica]
12 Hb_042123_010 0.1084966034 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Populus euphratica]
13 Hb_002445_020 0.1091988773 - - -
14 Hb_080048_030 0.1100569031 desease resistance Gene Name: NB-ARC Leucine-rich repeat containing protein [Theobroma cacao]
15 Hb_004143_080 0.1116585873 - - PREDICTED: protein ECERIFERUM 1 [Jatropha curcas]
16 Hb_001097_110 0.1121553192 - - gibberellin 20-oxidase, putative [Ricinus communis]
17 Hb_002329_050 0.1125768189 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000983_200 0.1147460094 - - PREDICTED: uncharacterized protein LOC105633924 [Jatropha curcas]
19 Hb_005675_030 0.1162906288 - - PREDICTED: 3-ketoacyl-CoA synthase 6 [Jatropha curcas]
20 Hb_001140_110 0.1177716903 - - hypothetical protein JCGZ_26123 [Jatropha curcas]

Gene co-expression network

sample Hb_022832_050 Hb_022832_050 Hb_005483_040 Hb_005483_040 Hb_022832_050--Hb_005483_040 Hb_000883_080 Hb_000883_080 Hb_022832_050--Hb_000883_080 Hb_018487_040 Hb_018487_040 Hb_022832_050--Hb_018487_040 Hb_002250_040 Hb_002250_040 Hb_022832_050--Hb_002250_040 Hb_002149_060 Hb_002149_060 Hb_022832_050--Hb_002149_060 Hb_018202_040 Hb_018202_040 Hb_022832_050--Hb_018202_040 Hb_002329_050 Hb_002329_050 Hb_005483_040--Hb_002329_050 Hb_005483_040--Hb_018487_040 Hb_005483_040--Hb_002250_040 Hb_005483_040--Hb_000883_080 Hb_006718_030 Hb_006718_030 Hb_005483_040--Hb_006718_030 Hb_011362_010 Hb_011362_010 Hb_005483_040--Hb_011362_010 Hb_000883_080--Hb_002329_050 Hb_000928_260 Hb_000928_260 Hb_000883_080--Hb_000928_260 Hb_000883_080--Hb_011362_010 Hb_000883_080--Hb_018487_040 Hb_000883_080--Hb_006718_030 Hb_002675_220 Hb_002675_220 Hb_018487_040--Hb_002675_220 Hb_018487_040--Hb_002250_040 Hb_001104_070 Hb_001104_070 Hb_018487_040--Hb_001104_070 Hb_018487_040--Hb_002329_050 Hb_080048_030 Hb_080048_030 Hb_018487_040--Hb_080048_030 Hb_002250_040--Hb_002675_220 Hb_000540_080 Hb_000540_080 Hb_002250_040--Hb_000540_080 Hb_002250_040--Hb_001104_070 Hb_005062_100 Hb_005062_100 Hb_002250_040--Hb_005062_100 Hb_002149_060--Hb_005483_040 Hb_002149_060--Hb_011362_010 Hb_002149_060--Hb_002329_050 Hb_033681_030 Hb_033681_030 Hb_002149_060--Hb_033681_030 Hb_000268_050 Hb_000268_050 Hb_002149_060--Hb_000268_050 Hb_011537_130 Hb_011537_130 Hb_018202_040--Hb_011537_130 Hb_005675_030 Hb_005675_030 Hb_018202_040--Hb_005675_030 Hb_169492_010 Hb_169492_010 Hb_018202_040--Hb_169492_010 Hb_002413_050 Hb_002413_050 Hb_018202_040--Hb_002413_050 Hb_010021_040 Hb_010021_040 Hb_018202_040--Hb_010021_040 Hb_018202_040--Hb_000883_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0346325 0.15738 0.364313 0.0194915 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 1.30646

CAGE analysis