Hb_022833_100

Information

Type -
Description -
Location Contig22833: 121624-136079
Sequence    

Annotation

kegg
ID rcu:RCOM_0902650
description phosphatidate cytidylyltransferase, putative (EC:2.7.7.41)
nr
ID XP_012091244.1
description PREDICTED: phosphatidate cytidylyltransferase 1 [Jatropha curcas]
swissprot
ID O04928
description Phosphatidate cytidylyltransferase 1 OS=Arabidopsis thaliana GN=CDS1 PE=1 SV=1
trembl
ID A0A067JMG2
description Phosphatidate cytidylyltransferase OS=Jatropha curcas GN=JCGZ_21145 PE=3 SV=1
Gene Ontology
ID GO:0016021
description phosphatidate cytidylyltransferase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23787: 121738-136033
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_022833_100 0.0 - - PREDICTED: phosphatidate cytidylyltransferase 1 [Jatropha curcas]
2 Hb_000172_290 0.0766180898 - - PREDICTED: trafficking protein particle complex subunit 12 [Jatropha curcas]
3 Hb_018292_010 0.0808639418 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-3 [Jatropha curcas]
4 Hb_044736_010 0.0844887324 - - ubiquitin-protein ligase, putative [Ricinus communis]
5 Hb_002289_080 0.0855995824 - - hypothetical protein POPTR_0016s05590g [Populus trichocarpa]
6 Hb_002445_120 0.0860757594 - - secretory carrier membrane protein, putative [Ricinus communis]
7 Hb_003777_310 0.0899400698 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002675_070 0.0903707769 - - PREDICTED: protein CASC3 [Jatropha curcas]
9 Hb_054865_150 0.0913142549 - - PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Jatropha curcas]
10 Hb_000976_410 0.0922492587 transcription factor TF Family: EIL ETHYLENE-INSENSITIVE3 protein, putative [Ricinus communis]
11 Hb_000318_290 0.0922987469 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor VRN1 isoform X1 [Jatropha curcas]
12 Hb_000862_030 0.0951668439 - - PREDICTED: phosphatidylinositol glycan anchor biosynthesis class U protein-like isoform X1 [Jatropha curcas]
13 Hb_001024_020 0.0954967929 - - hypothetical protein JCGZ_08989 [Jatropha curcas]
14 Hb_002685_110 0.0960523588 - - BTB/POZ domain-containing protein KCTD9, putative [Ricinus communis]
15 Hb_007638_030 0.0970190328 - - PREDICTED: phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN [Jatropha curcas]
16 Hb_000192_080 0.0971464358 - - PREDICTED: serine/threonine-protein kinase SAPK3 isoform X1 [Jatropha curcas]
17 Hb_005731_120 0.0975586384 transcription factor TF Family: TCP PREDICTED: transcription factor TCP20 [Jatropha curcas]
18 Hb_000127_040 0.0980708304 - - PREDICTED: protein S-acyltransferase 8-like [Jatropha curcas]
19 Hb_012322_010 0.0988126954 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
20 Hb_005914_080 0.1007316476 - - PREDICTED: uncharacterized protein LOC105632176 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_022833_100 Hb_022833_100 Hb_000172_290 Hb_000172_290 Hb_022833_100--Hb_000172_290 Hb_018292_010 Hb_018292_010 Hb_022833_100--Hb_018292_010 Hb_044736_010 Hb_044736_010 Hb_022833_100--Hb_044736_010 Hb_002289_080 Hb_002289_080 Hb_022833_100--Hb_002289_080 Hb_002445_120 Hb_002445_120 Hb_022833_100--Hb_002445_120 Hb_003777_310 Hb_003777_310 Hb_022833_100--Hb_003777_310 Hb_054865_150 Hb_054865_150 Hb_000172_290--Hb_054865_150 Hb_000254_090 Hb_000254_090 Hb_000172_290--Hb_000254_090 Hb_026198_070 Hb_026198_070 Hb_000172_290--Hb_026198_070 Hb_002685_210 Hb_002685_210 Hb_000172_290--Hb_002685_210 Hb_006478_020 Hb_006478_020 Hb_000172_290--Hb_006478_020 Hb_001971_010 Hb_001971_010 Hb_000172_290--Hb_001971_010 Hb_001571_050 Hb_001571_050 Hb_018292_010--Hb_001571_050 Hb_002965_090 Hb_002965_090 Hb_018292_010--Hb_002965_090 Hb_005463_110 Hb_005463_110 Hb_018292_010--Hb_005463_110 Hb_000174_180 Hb_000174_180 Hb_018292_010--Hb_000174_180 Hb_018292_010--Hb_002289_080 Hb_050454_010 Hb_050454_010 Hb_044736_010--Hb_050454_010 Hb_044736_010--Hb_002445_120 Hb_001018_110 Hb_001018_110 Hb_044736_010--Hb_001018_110 Hb_001018_130 Hb_001018_130 Hb_044736_010--Hb_001018_130 Hb_012322_010 Hb_012322_010 Hb_044736_010--Hb_012322_010 Hb_001168_020 Hb_001168_020 Hb_002289_080--Hb_001168_020 Hb_000310_090 Hb_000310_090 Hb_002289_080--Hb_000310_090 Hb_005144_050 Hb_005144_050 Hb_002289_080--Hb_005144_050 Hb_025194_100 Hb_025194_100 Hb_002289_080--Hb_025194_100 Hb_002289_080--Hb_006478_020 Hb_025098_010 Hb_025098_010 Hb_002289_080--Hb_025098_010 Hb_002445_120--Hb_003777_310 Hb_000318_290 Hb_000318_290 Hb_002445_120--Hb_000318_290 Hb_000056_260 Hb_000056_260 Hb_002445_120--Hb_000056_260 Hb_001633_130 Hb_001633_130 Hb_002445_120--Hb_001633_130 Hb_000107_200 Hb_000107_200 Hb_002445_120--Hb_000107_200 Hb_003777_310--Hb_000318_290 Hb_005170_040 Hb_005170_040 Hb_003777_310--Hb_005170_040 Hb_023001_060 Hb_023001_060 Hb_003777_310--Hb_023001_060 Hb_000608_320 Hb_000608_320 Hb_003777_310--Hb_000608_320 Hb_004032_150 Hb_004032_150 Hb_003777_310--Hb_004032_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.1666 15.087 9.84259 35.9384 16.4031 43.2622
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
33.0297 22.2945 28.2188 22.1885 24.8717

CAGE analysis