Hb_022958_010

Information

Type -
Description -
Location Contig22958: 47-3534
Sequence    

Annotation

kegg
ID rcu:RCOM_1429720
description phosphoprotein phosphatase, putative (EC:3.1.3.16)
nr
ID XP_011023690.1
description PREDICTED: probable disease resistance protein At4g27220 [Populus euphratica]
swissprot
ID -
description -
trembl
ID B9REY6
description Phosphoprotein phosphatase, putative OS=Ricinus communis GN=RCOM_1429720 PE=4 SV=1
Gene Ontology
ID GO:0000166
description disease resistance gene nbs-lrr family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_022958_010 0.0 - - PREDICTED: probable disease resistance protein At4g27220 [Populus euphratica]
2 Hb_154141_010 0.1584140382 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647845 [Jatropha curcas]
3 Hb_090530_010 0.1794722075 desease resistance Gene Name: NB-ARC phosphoprotein phosphatase, putative [Ricinus communis]
4 Hb_006274_050 0.1921760734 - - hypothetical protein VITISV_022618 [Vitis vinifera]
5 Hb_006905_030 0.1953060514 - - -
6 Hb_001341_020 0.1960075586 - - Uncharacterised protein [Bordetella pertussis]
7 Hb_032876_030 0.1963272262 - - -
8 Hb_000022_140 0.2014595205 - - hypothetical protein MIMGU_mgv1a009920mg [Erythranthe guttata]
9 Hb_002226_050 0.2030203121 - - PREDICTED: uncharacterized protein LOC105641366 isoform X1 [Jatropha curcas]
10 Hb_114893_040 0.2081329064 transcription factor TF Family: mTERF hypothetical protein JCGZ_10155 [Jatropha curcas]
11 Hb_005523_010 0.2102910676 transcription factor TF Family: PHD PREDICTED: helicase protein MOM1-like [Jatropha curcas]
12 Hb_000215_160 0.2144640925 - - PREDICTED: arginine--tRNA ligase, cytoplasmic-like isoform X1 [Jatropha curcas]
13 Hb_005250_030 0.2150931223 - - PREDICTED: uncharacterized protein LOC105640177 [Jatropha curcas]
14 Hb_000739_210 0.2152061029 - - PREDICTED: pentatricopeptide repeat-containing protein At1g01970 [Jatropha curcas]
15 Hb_007101_080 0.2163486546 transcription factor TF Family: GNAT GCN5-related N-acetyltransferase family protein [Populus trichocarpa]
16 Hb_002740_190 0.216459608 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 3, chloroplastic [Jatropha curcas]
17 Hb_011616_020 0.2203086861 - - hypothetical protein CICLE_v10004968mg [Citrus clementina]
18 Hb_005801_020 0.2212787681 - - PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3 [Jatropha curcas]
19 Hb_003058_020 0.2232950146 - - PREDICTED: proteinaceous RNase P 1, chloroplastic/mitochondrial-like [Jatropha curcas]
20 Hb_004218_190 0.223661627 transcription factor TF Family: SNF2 PREDICTED: F-box protein At3g54460 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_022958_010 Hb_022958_010 Hb_154141_010 Hb_154141_010 Hb_022958_010--Hb_154141_010 Hb_090530_010 Hb_090530_010 Hb_022958_010--Hb_090530_010 Hb_006274_050 Hb_006274_050 Hb_022958_010--Hb_006274_050 Hb_006905_030 Hb_006905_030 Hb_022958_010--Hb_006905_030 Hb_001341_020 Hb_001341_020 Hb_022958_010--Hb_001341_020 Hb_032876_030 Hb_032876_030 Hb_022958_010--Hb_032876_030 Hb_000599_230 Hb_000599_230 Hb_154141_010--Hb_000599_230 Hb_154141_010--Hb_006905_030 Hb_154141_010--Hb_090530_010 Hb_000010_290 Hb_000010_290 Hb_154141_010--Hb_000010_290 Hb_007313_100 Hb_007313_100 Hb_154141_010--Hb_007313_100 Hb_008092_080 Hb_008092_080 Hb_090530_010--Hb_008092_080 Hb_002740_190 Hb_002740_190 Hb_090530_010--Hb_002740_190 Hb_024714_080 Hb_024714_080 Hb_090530_010--Hb_024714_080 Hb_028707_110 Hb_028707_110 Hb_090530_010--Hb_028707_110 Hb_008123_010 Hb_008123_010 Hb_090530_010--Hb_008123_010 Hb_003077_130 Hb_003077_130 Hb_090530_010--Hb_003077_130 Hb_000365_240 Hb_000365_240 Hb_006274_050--Hb_000365_240 Hb_003089_020 Hb_003089_020 Hb_006274_050--Hb_003089_020 Hb_000922_030 Hb_000922_030 Hb_006274_050--Hb_000922_030 Hb_003467_030 Hb_003467_030 Hb_006274_050--Hb_003467_030 Hb_003994_110 Hb_003994_110 Hb_006274_050--Hb_003994_110 Hb_001435_030 Hb_001435_030 Hb_006274_050--Hb_001435_030 Hb_006573_150 Hb_006573_150 Hb_006905_030--Hb_006573_150 Hb_005601_020 Hb_005601_020 Hb_006905_030--Hb_005601_020 Hb_001981_040 Hb_001981_040 Hb_006905_030--Hb_001981_040 Hb_167103_010 Hb_167103_010 Hb_006905_030--Hb_167103_010 Hb_000062_510 Hb_000062_510 Hb_006905_030--Hb_000062_510 Hb_114893_040 Hb_114893_040 Hb_006905_030--Hb_114893_040 Hb_005396_060 Hb_005396_060 Hb_001341_020--Hb_005396_060 Hb_002226_050 Hb_002226_050 Hb_001341_020--Hb_002226_050 Hb_006452_240 Hb_006452_240 Hb_001341_020--Hb_006452_240 Hb_000022_140 Hb_000022_140 Hb_001341_020--Hb_000022_140 Hb_131872_010 Hb_131872_010 Hb_001341_020--Hb_131872_010 Hb_148593_010 Hb_148593_010 Hb_001341_020--Hb_148593_010 Hb_000215_160 Hb_000215_160 Hb_032876_030--Hb_000215_160 Hb_032876_030--Hb_006905_030 Hb_003292_030 Hb_003292_030 Hb_032876_030--Hb_003292_030 Hb_001492_030 Hb_001492_030 Hb_032876_030--Hb_001492_030 Hb_127552_040 Hb_127552_040 Hb_032876_030--Hb_127552_040 Hb_012055_030 Hb_012055_030 Hb_032876_030--Hb_012055_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.913614 0.180217 0.945702 0.305828 0.308334 1.16864
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.213182 0.188693 0.752099 1.67918 3.08679

CAGE analysis