Hb_023001_020

Information

Type -
Description -
Location Contig23001: 12138-16747
Sequence    

Annotation

kegg
ID cic:CICLE_v10012248mg
description hypothetical protein
nr
ID XP_012089821.1
description PREDICTED: mitochondrial succinate-fumarate transporter 1 [Jatropha curcas]
swissprot
ID Q9M038
description Mitochondrial succinate-fumarate transporter 1 OS=Arabidopsis thaliana GN=SFC1 PE=2 SV=1
trembl
ID A0A067JJ80
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00455 PE=3 SV=1
Gene Ontology
ID GO:0016021
description mitochondrial succinate-fumarate transporter 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24089: 12206-14306
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_023001_020 0.0 - - PREDICTED: mitochondrial succinate-fumarate transporter 1 [Jatropha curcas]
2 Hb_004701_030 0.0425146501 - - hypothetical protein POPTR_0015s00420g [Populus trichocarpa]
3 Hb_000139_250 0.0569593515 - - PREDICTED: putative methyltransferase C9orf114 [Jatropha curcas]
4 Hb_000104_080 0.0680835764 - - PREDICTED: WD repeat domain-containing protein 83 [Jatropha curcas]
5 Hb_000923_040 0.0709424928 - - PREDICTED: 15 kDa selenoprotein [Jatropha curcas]
6 Hb_004678_020 0.0713563445 - - PREDICTED: protein YIF1B [Jatropha curcas]
7 Hb_005701_040 0.0732881563 - - cellular nucleic acid binding protein, putative [Ricinus communis]
8 Hb_001541_260 0.0753213335 - - PREDICTED: protein MAK16 homolog [Jatropha curcas]
9 Hb_000424_010 0.0757982342 - - PREDICTED: F-box/LRR-repeat protein 15 isoform X1 [Jatropha curcas]
10 Hb_001014_010 0.0779322233 - - PREDICTED: uncharacterized protein LOC105647311 [Jatropha curcas]
11 Hb_008887_050 0.0785220279 - - PREDICTED: DNA-binding protein BIN4 [Jatropha curcas]
12 Hb_003656_160 0.0789407559 transcription factor TF Family: Alfin-like hypothetical protein B456_013G226400 [Gossypium raimondii]
13 Hb_012305_070 0.0808808341 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002007_350 0.0810066482 - - PREDICTED: mitochondrial Rho GTPase 1-like [Jatropha curcas]
15 Hb_000236_320 0.0810953371 - - PREDICTED: ER membrane protein complex subunit 8/9 homolog [Jatropha curcas]
16 Hb_004656_060 0.0821010996 - - PREDICTED: uncharacterized protein LOC105634581 [Jatropha curcas]
17 Hb_002652_040 0.0825581154 - - PREDICTED: ribonuclease P protein subunit p25-like protein [Jatropha curcas]
18 Hb_001894_030 0.0828029166 - - Nucleic acid-binding, OB-fold-like protein [Theobroma cacao]
19 Hb_144787_030 0.0849322304 - - PREDICTED: protein SLOW GREEN 1, chloroplastic [Jatropha curcas]
20 Hb_004374_150 0.0854887642 - - PREDICTED: uncharacterized protein LOC105650290 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_023001_020 Hb_023001_020 Hb_004701_030 Hb_004701_030 Hb_023001_020--Hb_004701_030 Hb_000139_250 Hb_000139_250 Hb_023001_020--Hb_000139_250 Hb_000104_080 Hb_000104_080 Hb_023001_020--Hb_000104_080 Hb_000923_040 Hb_000923_040 Hb_023001_020--Hb_000923_040 Hb_004678_020 Hb_004678_020 Hb_023001_020--Hb_004678_020 Hb_005701_040 Hb_005701_040 Hb_023001_020--Hb_005701_040 Hb_004656_060 Hb_004656_060 Hb_004701_030--Hb_004656_060 Hb_003091_010 Hb_003091_010 Hb_004701_030--Hb_003091_010 Hb_004701_030--Hb_004678_020 Hb_005895_040 Hb_005895_040 Hb_004701_030--Hb_005895_040 Hb_004701_030--Hb_000104_080 Hb_002942_220 Hb_002942_220 Hb_000139_250--Hb_002942_220 Hb_000424_010 Hb_000424_010 Hb_000139_250--Hb_000424_010 Hb_012654_010 Hb_012654_010 Hb_000139_250--Hb_012654_010 Hb_000803_300 Hb_000803_300 Hb_000139_250--Hb_000803_300 Hb_144787_030 Hb_144787_030 Hb_000139_250--Hb_144787_030 Hb_000104_080--Hb_000923_040 Hb_028707_090 Hb_028707_090 Hb_000104_080--Hb_028707_090 Hb_001584_290 Hb_001584_290 Hb_000104_080--Hb_001584_290 Hb_000236_280 Hb_000236_280 Hb_000104_080--Hb_000236_280 Hb_008143_030 Hb_008143_030 Hb_000104_080--Hb_008143_030 Hb_008887_050 Hb_008887_050 Hb_000923_040--Hb_008887_050 Hb_000345_530 Hb_000345_530 Hb_000923_040--Hb_000345_530 Hb_000923_040--Hb_001584_290 Hb_001040_040 Hb_001040_040 Hb_000923_040--Hb_001040_040 Hb_004678_020--Hb_005701_040 Hb_000001_180 Hb_000001_180 Hb_004678_020--Hb_000001_180 Hb_003384_030 Hb_003384_030 Hb_004678_020--Hb_003384_030 Hb_010222_080 Hb_010222_080 Hb_004678_020--Hb_010222_080 Hb_004678_020--Hb_002942_220 Hb_001504_150 Hb_001504_150 Hb_005701_040--Hb_001504_150 Hb_012305_070 Hb_012305_070 Hb_005701_040--Hb_012305_070 Hb_005914_230 Hb_005914_230 Hb_005701_040--Hb_005914_230 Hb_003656_160 Hb_003656_160 Hb_005701_040--Hb_003656_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
51.7818 28.9008 24.7103 12.3459 71.7266 57.0947
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
34.7395 22.8163 23.2331 18.3733 10.0362

CAGE analysis