Hb_023001_050

Information

Type -
Description -
Location Contig23001: 44165-47062
Sequence    

Annotation

kegg
ID pop:POPTR_0006s10330g
description POPTRDRAFT_560931; hypothetical protein
nr
ID XP_002308229.1
description hypothetical protein POPTR_0006s10330g [Populus trichocarpa]
swissprot
ID Q8RWG8
description Ran-binding protein 1 homolog b OS=Arabidopsis thaliana GN=RANBP1B PE=1 SV=2
trembl
ID A9PHR7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s10330g PE=2 SV=1
Gene Ontology
ID GO:0005622
description ran-binding protein 1 homolog a-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24091: 38387-43461 , PASA_asmbl_24093: 44418-44884 , PASA_asmbl_24094: 46189-46433 , PASA_asmbl_24095: 46831-47356
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_023001_050 0.0 - - hypothetical protein POPTR_0006s10330g [Populus trichocarpa]
2 Hb_003502_080 0.0707802579 - - vacuolar protein sorting, putative [Ricinus communis]
3 Hb_000349_060 0.071201328 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
4 Hb_105386_010 0.0730038374 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
5 Hb_000465_430 0.0780219288 - - PREDICTED: uncharacterized protein LOC105632325 [Jatropha curcas]
6 Hb_005016_170 0.0841490966 - - conserved hypothetical protein [Ricinus communis]
7 Hb_012092_010 0.0860764651 - - PREDICTED: uncharacterized protein LOC105635929 [Jatropha curcas]
8 Hb_001158_220 0.0874445487 - - PREDICTED: probable protein S-acyltransferase 7 [Jatropha curcas]
9 Hb_004198_010 0.0877595914 - - Eukaryotic translation initiation factor 2 subunit beta [Theobroma cacao]
10 Hb_004944_010 0.0877960294 - - small nuclear ribonucleoprotein E [Hevea brasiliensis]
11 Hb_041392_010 0.0882640515 - - PREDICTED: DNA-binding protein BIN4 [Jatropha curcas]
12 Hb_001047_100 0.0945139848 - - 40S ribosomal protein S18, putative [Ricinus communis]
13 Hb_033843_010 0.0951129867 - - PREDICTED: cell division control protein 2 homolog A isoform X1 [Jatropha curcas]
14 Hb_010691_060 0.0961559938 - - PREDICTED: 40S ribosomal protein S6 [Jatropha curcas]
15 Hb_012193_010 0.0962769121 - - nucleic acid binding protein, putative [Ricinus communis]
16 Hb_002217_310 0.0977420029 - - PREDICTED: ER membrane protein complex subunit 6 [Jatropha curcas]
17 Hb_000956_030 0.0995709384 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 19-like [Jatropha curcas]
18 Hb_001358_030 0.1003619729 - - PREDICTED: 40S ribosomal protein S3-3-like [Populus euphratica]
19 Hb_000322_100 0.1006783801 - - PREDICTED: casein kinase I isoform delta-like [Jatropha curcas]
20 Hb_000290_020 0.1014284975 - - PREDICTED: eukaryotic translation initiation factor 3 subunit K-like isoform X2 [Populus euphratica]

Gene co-expression network

sample Hb_023001_050 Hb_023001_050 Hb_003502_080 Hb_003502_080 Hb_023001_050--Hb_003502_080 Hb_000349_060 Hb_000349_060 Hb_023001_050--Hb_000349_060 Hb_105386_010 Hb_105386_010 Hb_023001_050--Hb_105386_010 Hb_000465_430 Hb_000465_430 Hb_023001_050--Hb_000465_430 Hb_005016_170 Hb_005016_170 Hb_023001_050--Hb_005016_170 Hb_012092_010 Hb_012092_010 Hb_023001_050--Hb_012092_010 Hb_003502_080--Hb_000465_430 Hb_003502_080--Hb_005016_170 Hb_033843_010 Hb_033843_010 Hb_003502_080--Hb_033843_010 Hb_021409_020 Hb_021409_020 Hb_003502_080--Hb_021409_020 Hb_000204_040 Hb_000204_040 Hb_003502_080--Hb_000204_040 Hb_004944_010 Hb_004944_010 Hb_000349_060--Hb_004944_010 Hb_000780_060 Hb_000780_060 Hb_000349_060--Hb_000780_060 Hb_000349_060--Hb_105386_010 Hb_001358_030 Hb_001358_030 Hb_000349_060--Hb_001358_030 Hb_000349_060--Hb_000465_430 Hb_001047_100 Hb_001047_100 Hb_105386_010--Hb_001047_100 Hb_105386_010--Hb_001358_030 Hb_000189_340 Hb_000189_340 Hb_105386_010--Hb_000189_340 Hb_003746_040 Hb_003746_040 Hb_105386_010--Hb_003746_040 Hb_000465_430--Hb_012092_010 Hb_002495_040 Hb_002495_040 Hb_000465_430--Hb_002495_040 Hb_000465_430--Hb_033843_010 Hb_000465_430--Hb_005016_170 Hb_000092_100 Hb_000092_100 Hb_000465_430--Hb_000092_100 Hb_001158_220 Hb_001158_220 Hb_005016_170--Hb_001158_220 Hb_002671_100 Hb_002671_100 Hb_005016_170--Hb_002671_100 Hb_000956_030 Hb_000956_030 Hb_005016_170--Hb_000956_030 Hb_010691_060 Hb_010691_060 Hb_005016_170--Hb_010691_060 Hb_002391_300 Hb_002391_300 Hb_012092_010--Hb_002391_300 Hb_012092_010--Hb_002495_040 Hb_003030_070 Hb_003030_070 Hb_012092_010--Hb_003030_070 Hb_001936_080 Hb_001936_080 Hb_012092_010--Hb_001936_080 Hb_001195_760 Hb_001195_760 Hb_012092_010--Hb_001195_760
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
391.589 166.956 199.838 271.253 424.839 631.664
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
321.885 320.5 205.041 146.591 49.6144

CAGE analysis