Hb_023001_060

Information

Type -
Description -
Location Contig23001: 49695-63310
Sequence    

Annotation

kegg
ID rcu:RCOM_0489610
description importin, putative
nr
ID XP_012089816.1
description PREDICTED: importin-11 [Jatropha curcas]
swissprot
ID Q9UI26
description Importin-11 OS=Homo sapiens GN=IPO11 PE=1 SV=1
trembl
ID A0A067JS85
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00452 PE=4 SV=1
Gene Ontology
ID GO:0005622
description importin-11 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24097: 49979-50554 , PASA_asmbl_24098: 50668-52901 , PASA_asmbl_24099: 53961-54796 , PASA_asmbl_24100: 56757-59292 , PASA_asmbl_24101: 59374-62712
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_023001_060 0.0 - - PREDICTED: importin-11 [Jatropha curcas]
2 Hb_001344_010 0.0645615414 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI11 [Jatropha curcas]
3 Hb_003777_310 0.0682738174 - - conserved hypothetical protein [Ricinus communis]
4 Hb_005490_030 0.0693233262 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 2 isoform X3 [Jatropha curcas]
5 Hb_005054_100 0.0740907193 - - PREDICTED: uncharacterized protein At2g39920 [Jatropha curcas]
6 Hb_003697_030 0.0747880727 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ATXR2 isoform X1 [Jatropha curcas]
7 Hb_000318_290 0.0869218036 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor VRN1 isoform X1 [Jatropha curcas]
8 Hb_000169_090 0.0875341563 - - PREDICTED: sodium/hydrogen exchanger 2-like [Jatropha curcas]
9 Hb_001009_170 0.0932143554 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
10 Hb_002445_120 0.0934522242 - - secretory carrier membrane protein, putative [Ricinus communis]
11 Hb_002740_180 0.094065532 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001691_120 0.0954342933 desease resistance Gene Name: AAA PREDICTED: vesicle-fusing ATPase [Jatropha curcas]
13 Hb_001266_080 0.0971597655 - - PREDICTED: eukaryotic translation initiation factor 2 subunit gamma-like [Jatropha curcas]
14 Hb_004732_020 0.0972284655 - - PREDICTED: chitobiosyldiphosphodolichol beta-mannosyltransferase isoform X1 [Populus euphratica]
15 Hb_004920_120 0.1005464946 - - conserved hypothetical protein [Ricinus communis]
16 Hb_021443_100 0.1006917265 - - -
17 Hb_000056_260 0.1047751455 - - hypothetical protein CICLE_v10033822mg [Citrus clementina]
18 Hb_004117_130 0.10500313 - - PREDICTED: uncharacterized protein LOC105649104 [Jatropha curcas]
19 Hb_005489_110 0.107869627 - - PREDICTED: putative transferase CAF17 homolog, mitochondrial [Jatropha curcas]
20 Hb_000172_290 0.1083978605 - - PREDICTED: trafficking protein particle complex subunit 12 [Jatropha curcas]

Gene co-expression network

sample Hb_023001_060 Hb_023001_060 Hb_001344_010 Hb_001344_010 Hb_023001_060--Hb_001344_010 Hb_003777_310 Hb_003777_310 Hb_023001_060--Hb_003777_310 Hb_005490_030 Hb_005490_030 Hb_023001_060--Hb_005490_030 Hb_005054_100 Hb_005054_100 Hb_023001_060--Hb_005054_100 Hb_003697_030 Hb_003697_030 Hb_023001_060--Hb_003697_030 Hb_000318_290 Hb_000318_290 Hb_023001_060--Hb_000318_290 Hb_001344_010--Hb_005490_030 Hb_001344_010--Hb_005054_100 Hb_000169_090 Hb_000169_090 Hb_001344_010--Hb_000169_090 Hb_000700_110 Hb_000700_110 Hb_001344_010--Hb_000700_110 Hb_001344_010--Hb_003777_310 Hb_003777_310--Hb_000318_290 Hb_002445_120 Hb_002445_120 Hb_003777_310--Hb_002445_120 Hb_005170_040 Hb_005170_040 Hb_003777_310--Hb_005170_040 Hb_000608_320 Hb_000608_320 Hb_003777_310--Hb_000608_320 Hb_004032_150 Hb_004032_150 Hb_003777_310--Hb_004032_150 Hb_001009_170 Hb_001009_170 Hb_005490_030--Hb_001009_170 Hb_000172_290 Hb_000172_290 Hb_005490_030--Hb_000172_290 Hb_000749_220 Hb_000749_220 Hb_005490_030--Hb_000749_220 Hb_005490_030--Hb_005054_100 Hb_002811_060 Hb_002811_060 Hb_005054_100--Hb_002811_060 Hb_002740_180 Hb_002740_180 Hb_005054_100--Hb_002740_180 Hb_012022_090 Hb_012022_090 Hb_005054_100--Hb_012022_090 Hb_005054_100--Hb_000169_090 Hb_003697_030--Hb_005490_030 Hb_021443_100 Hb_021443_100 Hb_003697_030--Hb_021443_100 Hb_003697_030--Hb_001344_010 Hb_003697_030--Hb_003777_310 Hb_004920_120 Hb_004920_120 Hb_003697_030--Hb_004920_120 Hb_054865_150 Hb_054865_150 Hb_000318_290--Hb_054865_150 Hb_000318_290--Hb_000608_320 Hb_000318_290--Hb_004032_150 Hb_000120_670 Hb_000120_670 Hb_000318_290--Hb_000120_670 Hb_004767_100 Hb_004767_100 Hb_000318_290--Hb_004767_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.0856 1.91532 1.85093 6.24998 6.07842 9.80313
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.0731 4.4188 7.42529 6.60173 4.13358

CAGE analysis