Hb_023051_010

Information

Type -
Description -
Location Contig23051: 588-5682
Sequence    

Annotation

kegg
ID pop:POPTR_0009s13300g
description POPTRDRAFT_878841; hypothetical protein
nr
ID XP_011046684.1
description PREDICTED: putative amidase C869.01 [Populus euphratica]
swissprot
ID Q9URY4
description Putative amidase C869.01 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC869.01 PE=3 SV=1
trembl
ID B9HRA0
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s13300g PE=4 SV=1
Gene Ontology
ID GO:0016884
description amidase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_023051_010 0.0 - - PREDICTED: putative amidase C869.01 [Populus euphratica]
2 Hb_000792_080 0.1689383883 - - hypothetical protein B456_012G111300, partial [Gossypium raimondii]
3 Hb_000377_140 0.199467457 - - -
4 Hb_048103_010 0.2158598284 - - -
5 Hb_004052_160 0.2367694854 - - Chain A, Rna Binding Protein
6 Hb_000982_150 0.2381217844 transcription factor TF Family: Orphans histidine kinase 1 plant, putative [Ricinus communis]
7 Hb_011781_040 0.2529520979 - - -
8 Hb_000258_360 0.2610648824 - - PREDICTED: uncharacterized protein LOC104455487 [Eucalyptus grandis]
9 Hb_011139_060 0.2641319159 - - -
10 Hb_000505_070 0.2727841654 - - PREDICTED: heparanase-like protein 3 isoform X1 [Jatropha curcas]
11 Hb_009102_020 0.2758812931 - - hypothetical protein EUGRSUZ_I01262 [Eucalyptus grandis]
12 Hb_009372_050 0.2820067569 - - unnamed protein product [Vitis vinifera]
13 Hb_007508_040 0.2870675381 - - PREDICTED: ATP synthase subunit gamma, mitochondrial [Jatropha curcas]
14 Hb_000997_010 0.289413544 - - PREDICTED: FHA domain-containing protein At4g14490 isoform X2 [Jatropha curcas]
15 Hb_000050_140 0.2917366442 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 2 isoform X1 [Populus euphratica]
16 Hb_055339_010 0.2956099089 - - EARLY-RESPONSIVE TO DEHYDRATION 7 family protein [Populus trichocarpa]
17 Hb_020549_010 0.2973302153 - - PREDICTED: uncharacterized protein LOC105638664 isoform X2 [Jatropha curcas]
18 Hb_035436_010 0.3009901156 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B-like [Populus euphratica]
19 Hb_144547_010 0.3034849614 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
20 Hb_001673_030 0.3048222962 - - hypothetical protein JCGZ_08729 [Jatropha curcas]

Gene co-expression network

sample Hb_023051_010 Hb_023051_010 Hb_000792_080 Hb_000792_080 Hb_023051_010--Hb_000792_080 Hb_000377_140 Hb_000377_140 Hb_023051_010--Hb_000377_140 Hb_048103_010 Hb_048103_010 Hb_023051_010--Hb_048103_010 Hb_004052_160 Hb_004052_160 Hb_023051_010--Hb_004052_160 Hb_000982_150 Hb_000982_150 Hb_023051_010--Hb_000982_150 Hb_011781_040 Hb_011781_040 Hb_023051_010--Hb_011781_040 Hb_000792_080--Hb_011781_040 Hb_000792_080--Hb_048103_010 Hb_055339_010 Hb_055339_010 Hb_000792_080--Hb_055339_010 Hb_001673_030 Hb_001673_030 Hb_000792_080--Hb_001673_030 Hb_001032_030 Hb_001032_030 Hb_000792_080--Hb_001032_030 Hb_009102_020 Hb_009102_020 Hb_000377_140--Hb_009102_020 Hb_144547_010 Hb_144547_010 Hb_000377_140--Hb_144547_010 Hb_123560_030 Hb_123560_030 Hb_000377_140--Hb_123560_030 Hb_000377_140--Hb_000982_150 Hb_000377_140--Hb_004052_160 Hb_002659_130 Hb_002659_130 Hb_048103_010--Hb_002659_130 Hb_009372_050 Hb_009372_050 Hb_048103_010--Hb_009372_050 Hb_000258_360 Hb_000258_360 Hb_048103_010--Hb_000258_360 Hb_048103_010--Hb_004052_160 Hb_182249_010 Hb_182249_010 Hb_004052_160--Hb_182249_010 Hb_009393_200 Hb_009393_200 Hb_004052_160--Hb_009393_200 Hb_013358_100 Hb_013358_100 Hb_004052_160--Hb_013358_100 Hb_002196_010 Hb_002196_010 Hb_004052_160--Hb_002196_010 Hb_040747_010 Hb_040747_010 Hb_004052_160--Hb_040747_010 Hb_000122_010 Hb_000122_010 Hb_004052_160--Hb_000122_010 Hb_020549_010 Hb_020549_010 Hb_000982_150--Hb_020549_010 Hb_000982_150--Hb_004052_160 Hb_013877_020 Hb_013877_020 Hb_000982_150--Hb_013877_020 Hb_068347_010 Hb_068347_010 Hb_000982_150--Hb_068347_010 Hb_011781_040--Hb_001032_030 Hb_063716_060 Hb_063716_060 Hb_011781_040--Hb_063716_060 Hb_094437_010 Hb_094437_010 Hb_011781_040--Hb_094437_010 Hb_115045_010 Hb_115045_010 Hb_011781_040--Hb_115045_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.2899 2.55534 5.44279 7.00017 0.245893 8.3531
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0442561 0 0

CAGE analysis