Hb_023051_020

Information

Type -
Description -
Location Contig23051: 19519-21042
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_023051_020 0.0 - - -
2 Hb_002989_040 0.0973676822 - - hypothetical protein 1 [Hevea brasiliensis]
3 Hb_003226_240 0.1159507025 - - PREDICTED: caffeoylshikimate esterase [Jatropha curcas]
4 Hb_034482_040 0.1258943118 - - aspartate kinase, partial [Francisella tularensis]
5 Hb_113635_010 0.1454342941 - - -
6 Hb_001425_070 0.1551424905 - - -
7 Hb_091433_030 0.1557837308 - - -
8 Hb_159352_010 0.1604592826 - - hypothetical protein JCGZ_12393 [Jatropha curcas]
9 Hb_001143_070 0.1639787032 - - Acyl-CoA N-acyltransferases (NAT) superfamily protein isoform 1 [Theobroma cacao]
10 Hb_000103_030 0.1654508277 - - hypothetical protein VITISV_021700 [Vitis vinifera]
11 Hb_001433_100 0.1664846378 - - PREDICTED: F-box/LRR-repeat protein 3 isoform X1 [Jatropha curcas]
12 Hb_000264_130 0.1700121756 - - PREDICTED: uncharacterized protein LOC103870402 [Brassica rapa]
13 Hb_032202_250 0.1703274153 - - PREDICTED: F-box protein PP2-A13 [Jatropha curcas]
14 Hb_001425_060 0.176385649 - - conserved hypothetical protein [Ricinus communis]
15 Hb_012022_100 0.178022825 - - CPRD49 family protein [Populus trichocarpa]
16 Hb_000920_320 0.1810494075 transcription factor TF Family: Orphans hypothetical protein JCGZ_24525 [Jatropha curcas]
17 Hb_001373_100 0.1853537004 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000300_210 0.1910776931 - - gd2b, putative [Ricinus communis]
19 Hb_002326_170 0.1921852626 - - Protein Z, putative [Ricinus communis]
20 Hb_000329_660 0.192212143 - - PREDICTED: carotenoid cleavage dioxygenase 7, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_023051_020 Hb_023051_020 Hb_002989_040 Hb_002989_040 Hb_023051_020--Hb_002989_040 Hb_003226_240 Hb_003226_240 Hb_023051_020--Hb_003226_240 Hb_034482_040 Hb_034482_040 Hb_023051_020--Hb_034482_040 Hb_113635_010 Hb_113635_010 Hb_023051_020--Hb_113635_010 Hb_001425_070 Hb_001425_070 Hb_023051_020--Hb_001425_070 Hb_091433_030 Hb_091433_030 Hb_023051_020--Hb_091433_030 Hb_002989_040--Hb_003226_240 Hb_002989_040--Hb_034482_040 Hb_001143_070 Hb_001143_070 Hb_002989_040--Hb_001143_070 Hb_000103_030 Hb_000103_030 Hb_002989_040--Hb_000103_030 Hb_000920_320 Hb_000920_320 Hb_002989_040--Hb_000920_320 Hb_001433_100 Hb_001433_100 Hb_003226_240--Hb_001433_100 Hb_003226_240--Hb_034482_040 Hb_003226_240--Hb_000920_320 Hb_032202_250 Hb_032202_250 Hb_003226_240--Hb_032202_250 Hb_034482_040--Hb_001433_100 Hb_034482_040--Hb_032202_250 Hb_141194_010 Hb_141194_010 Hb_034482_040--Hb_141194_010 Hb_002290_050 Hb_002290_050 Hb_113635_010--Hb_002290_050 Hb_001186_070 Hb_001186_070 Hb_113635_010--Hb_001186_070 Hb_001373_100 Hb_001373_100 Hb_113635_010--Hb_001373_100 Hb_000329_660 Hb_000329_660 Hb_113635_010--Hb_000329_660 Hb_002326_170 Hb_002326_170 Hb_113635_010--Hb_002326_170 Hb_001425_060 Hb_001425_060 Hb_001425_070--Hb_001425_060 Hb_001425_070--Hb_091433_030 Hb_004461_020 Hb_004461_020 Hb_001425_070--Hb_004461_020 Hb_001425_070--Hb_001143_070 Hb_001425_070--Hb_000103_030 Hb_001425_070--Hb_034482_040 Hb_091433_030--Hb_001425_060 Hb_003060_040 Hb_003060_040 Hb_091433_030--Hb_003060_040 Hb_091433_030--Hb_002989_040 Hb_091433_030--Hb_000103_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0459295 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.747605 1.4268 0.437866 0.0689986 0

CAGE analysis