Hb_023142_010

Information

Type -
Description -
Location Contig23142: 12968-15689
Sequence    

Annotation

kegg
ID bvg:104908276
description uncharacterized LOC104908276
nr
ID XP_010695673.1
description PREDICTED: uncharacterized protein LOC104908276 [Beta vulgaris subsp. vulgaris]
swissprot
ID -
description -
trembl
ID E2DN01
description Putative uncharacterized protein OS=Beta vulgaris PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_023142_010 0.0 - - PREDICTED: uncharacterized protein LOC104908276 [Beta vulgaris subsp. vulgaris]
2 Hb_128193_010 0.1953194804 - - PREDICTED: uncharacterized protein LOC103699534, partial [Phoenix dactylifera]
3 Hb_097933_010 0.2018314671 - - PREDICTED: 2-alkenal reductase (NADP(+)-dependent)-like isoform X1 [Jatropha curcas]
4 Hb_188163_010 0.220564439 - - hypothetical protein CISIN_1g048732mg [Citrus sinensis]
5 Hb_009557_010 0.2325860841 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
6 Hb_171900_010 0.2331856733 - - conserved hypothetical protein [Ricinus communis]
7 Hb_010129_020 0.2332177692 - - cytochrome P450, putative [Ricinus communis]
8 Hb_089299_010 0.2345350077 - - conserved hypothetical protein [Ricinus communis]
9 Hb_142051_010 0.238473022 - - -
10 Hb_000906_120 0.2419708978 - - hypothetical protein VITISV_006406 [Vitis vinifera]
11 Hb_000190_130 0.2461999631 - - cysteine protease inhibitor [Populus tremula]
12 Hb_001629_040 0.2462249612 - - hypothetical protein POPTR_0001s41630g [Populus trichocarpa]
13 Hb_093039_010 0.2463126006 - - JHL22C18.10 [Jatropha curcas]
14 Hb_003780_010 0.2463288761 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000574_490 0.2466140674 - - PREDICTED: probable U3 small nucleolar RNA-associated protein 11 isoform X1 [Jatropha curcas]
16 Hb_006907_110 0.2472069557 - - -
17 Hb_000575_050 0.247289909 - - hypothetical protein CISIN_1g0468601mg, partial [Citrus sinensis]
18 Hb_021888_160 0.2475211669 - - -
19 Hb_002570_050 0.2476441112 - - PREDICTED: uncharacterized protein LOC104897677 [Beta vulgaris subsp. vulgaris]
20 Hb_000501_080 0.2484283736 - - hypothetical protein OsJ_22457 [Oryza sativa Japonica Group]

Gene co-expression network

sample Hb_023142_010 Hb_023142_010 Hb_128193_010 Hb_128193_010 Hb_023142_010--Hb_128193_010 Hb_097933_010 Hb_097933_010 Hb_023142_010--Hb_097933_010 Hb_188163_010 Hb_188163_010 Hb_023142_010--Hb_188163_010 Hb_009557_010 Hb_009557_010 Hb_023142_010--Hb_009557_010 Hb_171900_010 Hb_171900_010 Hb_023142_010--Hb_171900_010 Hb_010129_020 Hb_010129_020 Hb_023142_010--Hb_010129_020 Hb_001629_040 Hb_001629_040 Hb_128193_010--Hb_001629_040 Hb_000009_010 Hb_000009_010 Hb_128193_010--Hb_000009_010 Hb_128193_010--Hb_009557_010 Hb_031866_030 Hb_031866_030 Hb_128193_010--Hb_031866_030 Hb_009152_030 Hb_009152_030 Hb_128193_010--Hb_009152_030 Hb_097933_010--Hb_188163_010 Hb_000575_050 Hb_000575_050 Hb_097933_010--Hb_000575_050 Hb_021888_160 Hb_021888_160 Hb_097933_010--Hb_021888_160 Hb_006907_110 Hb_006907_110 Hb_097933_010--Hb_006907_110 Hb_000501_080 Hb_000501_080 Hb_097933_010--Hb_000501_080 Hb_174662_020 Hb_174662_020 Hb_097933_010--Hb_174662_020 Hb_004129_180 Hb_004129_180 Hb_188163_010--Hb_004129_180 Hb_188163_010--Hb_010129_020 Hb_000906_120 Hb_000906_120 Hb_188163_010--Hb_000906_120 Hb_002188_050 Hb_002188_050 Hb_188163_010--Hb_002188_050 Hb_006415_010 Hb_006415_010 Hb_188163_010--Hb_006415_010 Hb_054343_010 Hb_054343_010 Hb_009557_010--Hb_054343_010 Hb_009557_010--Hb_171900_010 Hb_009557_010--Hb_001629_040 Hb_009557_010--Hb_000009_010 Hb_171900_010--Hb_054343_010 Hb_000967_030 Hb_000967_030 Hb_171900_010--Hb_000967_030 Hb_000159_030 Hb_000159_030 Hb_171900_010--Hb_000159_030 Hb_159957_020 Hb_159957_020 Hb_171900_010--Hb_159957_020 Hb_019299_050 Hb_019299_050 Hb_171900_010--Hb_019299_050 Hb_010129_020--Hb_004129_180 Hb_010129_020--Hb_097933_010 Hb_010129_020--Hb_000906_120 Hb_001880_020 Hb_001880_020 Hb_010129_020--Hb_001880_020 Hb_010129_020--Hb_002188_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0103601 0 0.00653008 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0652962 0.0634179

CAGE analysis