Hb_023226_030

Information

Type transcription factor
Description TF Family: HB
Location Contig23226: 42902-50307
Sequence    

Annotation

kegg
ID vvi:100254822
description homeobox-leucine zipper protein HOX32
nr
ID XP_012075627.1
description PREDICTED: homeobox-leucine zipper protein ATHB-14-like [Jatropha curcas]
swissprot
ID Q6AST1
description Homeobox-leucine zipper protein HOX32 OS=Oryza sativa subsp. japonica GN=HOX32 PE=2 SV=1
trembl
ID A0A067KRL6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09223 PE=4 SV=1
Gene Ontology
ID GO:0005634
description phabulosa family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24417: 42421-42680 , PASA_asmbl_24418: 43029-50193
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_023226_030 0.0 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-14-like [Jatropha curcas]
2 Hb_034507_060 0.0877432823 - - PREDICTED: UPF0503 protein At3g09070, chloroplastic-like [Citrus sinensis]
3 Hb_003430_080 0.1010798218 - - zinc finger protein, putative [Ricinus communis]
4 Hb_172706_020 0.1029403362 - - PREDICTED: protein ABIL2 [Jatropha curcas]
5 Hb_005694_180 0.1062143074 - - PREDICTED: cytochrome b5 [Jatropha curcas]
6 Hb_000309_030 0.1220821189 - - PREDICTED: formate dehydrogenase, mitochondrial [Jatropha curcas]
7 Hb_001195_420 0.1254513202 - - PREDICTED: uncharacterized protein LOC105633774 isoform X4 [Jatropha curcas]
8 Hb_012760_090 0.1267648261 - - Aspartic proteinase-like protein 1 [Morus notabilis]
9 Hb_000740_090 0.1276814734 - - conserved hypothetical protein [Ricinus communis]
10 Hb_007192_050 0.1313827151 - - PREDICTED: uncharacterized protein LOC105640295 [Jatropha curcas]
11 Hb_001053_210 0.1354723396 - - -
12 Hb_000940_210 0.1355700348 - - cyclophilin [Hevea brasiliensis]
13 Hb_002518_090 0.1356595292 - - PREDICTED: tubulin beta-2 chain [Jatropha curcas]
14 Hb_010050_020 0.1378804734 - - PREDICTED: uncharacterized protein LOC102601222 [Solanum tuberosum]
15 Hb_000791_050 0.1384125585 - - PREDICTED: uncharacterized protein LOC105636760 [Jatropha curcas]
16 Hb_001221_390 0.1443965257 - - Phospholipase C 4 precursor, putative [Ricinus communis]
17 Hb_003540_120 0.1447564464 - - calmodulin binding protein, putative [Ricinus communis]
18 Hb_000116_240 0.1450437751 transcription factor TF Family: HB homeobox-leucine zipper family protein [Populus trichocarpa]
19 Hb_004678_030 0.1452910057 - - fructokinase [Manihot esculenta]
20 Hb_006831_080 0.1460210737 - - PREDICTED: uncharacterized protein LOC105642126 [Jatropha curcas]

Gene co-expression network

sample Hb_023226_030 Hb_023226_030 Hb_034507_060 Hb_034507_060 Hb_023226_030--Hb_034507_060 Hb_003430_080 Hb_003430_080 Hb_023226_030--Hb_003430_080 Hb_172706_020 Hb_172706_020 Hb_023226_030--Hb_172706_020 Hb_005694_180 Hb_005694_180 Hb_023226_030--Hb_005694_180 Hb_000309_030 Hb_000309_030 Hb_023226_030--Hb_000309_030 Hb_001195_420 Hb_001195_420 Hb_023226_030--Hb_001195_420 Hb_012760_090 Hb_012760_090 Hb_034507_060--Hb_012760_090 Hb_034507_060--Hb_005694_180 Hb_003710_020 Hb_003710_020 Hb_034507_060--Hb_003710_020 Hb_004218_130 Hb_004218_130 Hb_034507_060--Hb_004218_130 Hb_010050_020 Hb_010050_020 Hb_034507_060--Hb_010050_020 Hb_003430_080--Hb_005694_180 Hb_000003_030 Hb_000003_030 Hb_003430_080--Hb_000003_030 Hb_000740_090 Hb_000740_090 Hb_003430_080--Hb_000740_090 Hb_003430_080--Hb_001195_420 Hb_001009_150 Hb_001009_150 Hb_003430_080--Hb_001009_150 Hb_000940_210 Hb_000940_210 Hb_172706_020--Hb_000940_210 Hb_002518_090 Hb_002518_090 Hb_172706_020--Hb_002518_090 Hb_172706_020--Hb_034507_060 Hb_172706_020--Hb_004218_130 Hb_172706_020--Hb_000309_030 Hb_005694_180--Hb_001195_420 Hb_005694_180--Hb_000309_030 Hb_005694_180--Hb_012760_090 Hb_000116_240 Hb_000116_240 Hb_000309_030--Hb_000116_240 Hb_000261_310 Hb_000261_310 Hb_000309_030--Hb_000261_310 Hb_004883_020 Hb_004883_020 Hb_000309_030--Hb_004883_020 Hb_000318_170 Hb_000318_170 Hb_000309_030--Hb_000318_170 Hb_000309_030--Hb_010050_020 Hb_000590_070 Hb_000590_070 Hb_000309_030--Hb_000590_070 Hb_001195_420--Hb_001009_150 Hb_000363_180 Hb_000363_180 Hb_001195_420--Hb_000363_180 Hb_000012_400 Hb_000012_400 Hb_001195_420--Hb_000012_400 Hb_001221_390 Hb_001221_390 Hb_001195_420--Hb_001221_390
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.69774 7.33983 13.5078 17.4654 0.728067 1.27758
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.46716 1.46158 0.352001 9.42041 4.55375

CAGE analysis