Hb_023226_050

Information

Type transcription factor
Description TF Family: BES1
Location Contig23226: 66078-66863
Sequence    

Annotation

kegg
ID rcu:RCOM_1338750
description BRASSINAZOLE-RESISTANT 1 protein, putative
nr
ID XP_002523196.1
description BRASSINAZOLE-RESISTANT 1 protein, putative [Ricinus communis]
swissprot
ID O80831
description Beta-amylase 7 OS=Arabidopsis thaliana GN=BAM7 PE=2 SV=2
trembl
ID B9SB36
description BRASSINAZOLE-RESISTANT 1 protein, putative OS=Ricinus communis GN=RCOM_1338750 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_023226_050 0.0 transcription factor TF Family: BES1 BRASSINAZOLE-RESISTANT 1 protein, putative [Ricinus communis]
2 Hb_000392_200 0.1194325384 - - PREDICTED: cytochrome P450 98A2-like isoform X2 [Phoenix dactylifera]
3 Hb_001049_080 0.158803326 - - -
4 Hb_000375_270 0.2054434635 - - -
5 Hb_000006_020 0.2347338938 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000015_240 0.2347338938 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000016_090 0.2347338938 - - -
8 Hb_000016_240 0.2347338938 transcription factor TF Family: LOB hypothetical protein POPTR_0012s13910g [Populus trichocarpa]
9 Hb_000028_020 0.2347338938 - - -
10 Hb_000028_300 0.2347338938 - - hypothetical protein 0_13835_01, partial [Pinus radiata]
11 Hb_000031_310 0.2347338938 transcription factor TF Family: Orphans hypothetical protein [Trichormus azollae]
12 Hb_000037_100 0.2347338938 - - nucleic acid binding protein, putative [Ricinus communis]
13 Hb_000045_030 0.2347338938 - - -
14 Hb_000048_130 0.2347338938 - - S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis]
15 Hb_000056_050 0.2347338938 - - PREDICTED: uncharacterized protein LOC104117826 [Nicotiana tomentosiformis]
16 Hb_000070_150 0.2347338938 - - hypothetical protein POPTR_0004s19980g [Populus trichocarpa]
17 Hb_000077_340 0.2347338938 - - -
18 Hb_000080_040 0.2347338938 - - -
19 Hb_000086_260 0.2347338938 transcription factor TF Family: GRAS DELLA protein GAIP, putative [Ricinus communis]
20 Hb_000086_650 0.2347338938 - - Putative methyltransferase family protein [Solanum demissum]

Gene co-expression network

sample Hb_023226_050 Hb_023226_050 Hb_000392_200 Hb_000392_200 Hb_023226_050--Hb_000392_200 Hb_001049_080 Hb_001049_080 Hb_023226_050--Hb_001049_080 Hb_000375_270 Hb_000375_270 Hb_023226_050--Hb_000375_270 Hb_000006_020 Hb_000006_020 Hb_023226_050--Hb_000006_020 Hb_000015_240 Hb_000015_240 Hb_023226_050--Hb_000015_240 Hb_000016_090 Hb_000016_090 Hb_023226_050--Hb_000016_090 Hb_000392_200--Hb_001049_080 Hb_007632_150 Hb_007632_150 Hb_000392_200--Hb_007632_150 Hb_086922_010 Hb_086922_010 Hb_000392_200--Hb_086922_010 Hb_162304_010 Hb_162304_010 Hb_000392_200--Hb_162304_010 Hb_000392_200--Hb_000006_020 Hb_001049_080--Hb_007632_150 Hb_001049_080--Hb_086922_010 Hb_135811_030 Hb_135811_030 Hb_001049_080--Hb_135811_030 Hb_069877_010 Hb_069877_010 Hb_001049_080--Hb_069877_010 Hb_094730_010 Hb_094730_010 Hb_000375_270--Hb_094730_010 Hb_000375_270--Hb_000006_020 Hb_000375_270--Hb_000015_240 Hb_000375_270--Hb_000016_090 Hb_000016_240 Hb_000016_240 Hb_000375_270--Hb_000016_240 Hb_000028_020 Hb_000028_020 Hb_000375_270--Hb_000028_020 Hb_000006_020--Hb_000015_240 Hb_000006_020--Hb_000016_090 Hb_000006_020--Hb_000016_240 Hb_000006_020--Hb_000028_020 Hb_000028_300 Hb_000028_300 Hb_000006_020--Hb_000028_300 Hb_000031_310 Hb_000031_310 Hb_000006_020--Hb_000031_310 Hb_000006_020--Hb_000015_240 Hb_000006_020--Hb_000016_090 Hb_000006_020--Hb_000016_240 Hb_000006_020--Hb_000028_020 Hb_000006_020--Hb_000028_300 Hb_000006_020--Hb_000031_310 Hb_000006_020--Hb_000015_240 Hb_000006_020--Hb_000016_090 Hb_000006_020--Hb_000016_240 Hb_000006_020--Hb_000028_020 Hb_000006_020--Hb_000028_300 Hb_000006_020--Hb_000031_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.116549 0 1.2869 0 0.0359152 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis