Hb_023226_060

Information

Type -
Description -
Location Contig23226: 67987-73566
Sequence    

Annotation

kegg
ID rcu:RCOM_1338760
description DNA-damage repair protein drt111, putative
nr
ID CBI31002.3
description unnamed protein product [Vitis vinifera]
swissprot
ID P42698
description DNA-damage-repair/toleration protein DRT111, chloroplastic OS=Arabidopsis thaliana GN=DRT111 PE=1 SV=2
trembl
ID B9SB37
description DNA-damage repair protein drt111, putative OS=Ricinus communis GN=RCOM_1338760 PE=4 SV=1
Gene Ontology
ID GO:0044424
description dna-damage-repair toleration protein chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24421: 68102-68221 , PASA_asmbl_24422: 68328-73102
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_023226_060 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_000733_060 0.0733080205 - - PREDICTED: protein GUCD1 isoform X1 [Jatropha curcas]
3 Hb_000175_490 0.0757056144 - - PREDICTED: probable polygalacturonase At1g80170 isoform X1 [Jatropha curcas]
4 Hb_005288_160 0.0763555719 - - PREDICTED: uncharacterized protein LOC105647746 isoform X1 [Jatropha curcas]
5 Hb_000768_030 0.0819054696 - - PREDICTED: ELMO domain-containing protein A isoform X1 [Jatropha curcas]
6 Hb_022256_040 0.0853757736 - - PREDICTED: probable E3 ubiquitin-protein ligase rbrA isoform X2 [Jatropha curcas]
7 Hb_011644_020 0.0858428307 - - PREDICTED: choline-phosphate cytidylyltransferase 2 [Vitis vinifera]
8 Hb_003352_050 0.0905962291 - - PREDICTED: uncharacterized protein LOC105643709 [Jatropha curcas]
9 Hb_128548_020 0.0911092283 - - PREDICTED: transmembrane protein 56-like [Jatropha curcas]
10 Hb_000176_110 0.0952177008 - - PREDICTED: serine--tRNA ligase [Jatropha curcas]
11 Hb_003453_020 0.097303626 - - PREDICTED: histidine biosynthesis bifunctional protein hisIE, chloroplastic [Jatropha curcas]
12 Hb_006922_080 0.0979574071 - - PREDICTED: E3 ubiquitin-protein ligase SINAT3-like [Glycine max]
13 Hb_000012_090 0.1029547302 - - 3'-5' exonuclease, putative [Ricinus communis]
14 Hb_000997_020 0.1035154758 - - PREDICTED: uncharacterized protein LOC105629694 [Jatropha curcas]
15 Hb_004108_020 0.104610044 - - PREDICTED: mitochondrial ubiquitin ligase activator of NFKB 1 [Populus euphratica]
16 Hb_004096_170 0.1053110697 - - PREDICTED: uncharacterized protein DDB_G0275933 [Jatropha curcas]
17 Hb_002631_050 0.1054584726 - - membrane associated ring finger 1,8, putative [Ricinus communis]
18 Hb_000172_120 0.1058036127 - - PREDICTED: uncharacterized protein LOC105650770 isoform X1 [Jatropha curcas]
19 Hb_011282_030 0.1065426282 - - PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH8 isoform X1 [Jatropha curcas]
20 Hb_006029_010 0.1066439016 - - PREDICTED: putative disease resistance RPP13-like protein 1 [Populus euphratica]

Gene co-expression network

sample Hb_023226_060 Hb_023226_060 Hb_000733_060 Hb_000733_060 Hb_023226_060--Hb_000733_060 Hb_000175_490 Hb_000175_490 Hb_023226_060--Hb_000175_490 Hb_005288_160 Hb_005288_160 Hb_023226_060--Hb_005288_160 Hb_000768_030 Hb_000768_030 Hb_023226_060--Hb_000768_030 Hb_022256_040 Hb_022256_040 Hb_023226_060--Hb_022256_040 Hb_011644_020 Hb_011644_020 Hb_023226_060--Hb_011644_020 Hb_000733_060--Hb_005288_160 Hb_002631_050 Hb_002631_050 Hb_000733_060--Hb_002631_050 Hb_000733_060--Hb_022256_040 Hb_000733_060--Hb_000768_030 Hb_001001_160 Hb_001001_160 Hb_000733_060--Hb_001001_160 Hb_000175_490--Hb_000768_030 Hb_000997_020 Hb_000997_020 Hb_000175_490--Hb_000997_020 Hb_004032_050 Hb_004032_050 Hb_000175_490--Hb_004032_050 Hb_182026_010 Hb_182026_010 Hb_000175_490--Hb_182026_010 Hb_002276_190 Hb_002276_190 Hb_000175_490--Hb_002276_190 Hb_003605_070 Hb_003605_070 Hb_005288_160--Hb_003605_070 Hb_128548_020 Hb_128548_020 Hb_005288_160--Hb_128548_020 Hb_005288_160--Hb_002631_050 Hb_003453_020 Hb_003453_020 Hb_005288_160--Hb_003453_020 Hb_000768_030--Hb_003453_020 Hb_000768_030--Hb_004032_050 Hb_003384_030 Hb_003384_030 Hb_000768_030--Hb_003384_030 Hb_002997_100 Hb_002997_100 Hb_022256_040--Hb_002997_100 Hb_002874_070 Hb_002874_070 Hb_022256_040--Hb_002874_070 Hb_022256_040--Hb_002631_050 Hb_000230_330 Hb_000230_330 Hb_022256_040--Hb_000230_330 Hb_001584_110 Hb_001584_110 Hb_022256_040--Hb_001584_110 Hb_079326_010 Hb_079326_010 Hb_011644_020--Hb_079326_010 Hb_000684_180 Hb_000684_180 Hb_011644_020--Hb_000684_180 Hb_000540_140 Hb_000540_140 Hb_011644_020--Hb_000540_140 Hb_001195_030 Hb_001195_030 Hb_011644_020--Hb_001195_030 Hb_007111_040 Hb_007111_040 Hb_011644_020--Hb_007111_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.03694 0.520457 0.660853 1.14371 6.195 4.10277
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.00859 1.80505 2.22515 1.01232 0.616685

CAGE analysis