Hb_023226_070

Information

Type -
Description -
Location Contig23226: 79331-97412
Sequence    

Annotation

kegg
ID rcu:RCOM_1338890
description hypothetical protein
nr
ID XP_002523200.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q922D4
description Serine/threonine-protein phosphatase 6 regulatory subunit 3 OS=Mus musculus GN=Ppp6r3 PE=1 SV=1
trembl
ID B9SAX7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1338890 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24424: 79619-97446 , PASA_asmbl_24427: 91761-92240
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_023226_070 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_060094_020 0.0549884493 desease resistance Gene Name: ATP_bind_1 xpa-binding protein, putative [Ricinus communis]
3 Hb_000094_090 0.0646463978 - - PREDICTED: DUF21 domain-containing protein At1g47330 isoform X1 [Jatropha curcas]
4 Hb_001754_030 0.0651802458 - - PREDICTED: ubiquitin-like-specific protease ESD4 [Jatropha curcas]
5 Hb_000445_060 0.0655369268 - - PREDICTED: uncharacterized protein LOC105638996 isoform X3 [Jatropha curcas]
6 Hb_000723_110 0.0704259704 - - PREDICTED: TSL-kinase interacting protein 1 [Jatropha curcas]
7 Hb_002811_040 0.0711852766 - - 5'->3' exoribonuclease, putative [Ricinus communis]
8 Hb_001534_210 0.0722331542 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105642316 isoform X2 [Jatropha curcas]
9 Hb_000809_160 0.0722959557 - - hypothetical protein JCGZ_12355 [Jatropha curcas]
10 Hb_017214_040 0.0724367828 - - PREDICTED: E3 ubiquitin-protein ligase COP1 isoform X1 [Jatropha curcas]
11 Hb_000868_120 0.0732594485 - - PREDICTED: suppressor of mec-8 and unc-52 protein homolog 2 [Jatropha curcas]
12 Hb_004870_050 0.0748098488 - - PREDICTED: ATP-dependent RNA helicase DBP3 [Jatropha curcas]
13 Hb_004032_230 0.0751742031 - - PREDICTED: uncharacterized protein LOC105635143 [Jatropha curcas]
14 Hb_001558_060 0.0755402264 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 17 isoform X2 [Jatropha curcas]
15 Hb_000227_270 0.0769501804 transcription factor TF Family: TRAF PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2 isoform X1 [Jatropha curcas]
16 Hb_010287_020 0.077378197 - - CCR4-NOT transcription complex subunit, putative [Ricinus communis]
17 Hb_000645_170 0.0777523968 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000866_450 0.078928469 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
19 Hb_000375_290 0.0789689365 - - DAG protein, chloroplast precursor, putative [Ricinus communis]
20 Hb_000373_230 0.0791551593 transcription factor TF Family: TUB phosphoric diester hydrolase, putative [Ricinus communis]

Gene co-expression network

sample Hb_023226_070 Hb_023226_070 Hb_060094_020 Hb_060094_020 Hb_023226_070--Hb_060094_020 Hb_000094_090 Hb_000094_090 Hb_023226_070--Hb_000094_090 Hb_001754_030 Hb_001754_030 Hb_023226_070--Hb_001754_030 Hb_000445_060 Hb_000445_060 Hb_023226_070--Hb_000445_060 Hb_000723_110 Hb_000723_110 Hb_023226_070--Hb_000723_110 Hb_002811_040 Hb_002811_040 Hb_023226_070--Hb_002811_040 Hb_003927_040 Hb_003927_040 Hb_060094_020--Hb_003927_040 Hb_004870_050 Hb_004870_050 Hb_060094_020--Hb_004870_050 Hb_000645_170 Hb_000645_170 Hb_060094_020--Hb_000645_170 Hb_060094_020--Hb_001754_030 Hb_010417_070 Hb_010417_070 Hb_060094_020--Hb_010417_070 Hb_000363_120 Hb_000363_120 Hb_000094_090--Hb_000363_120 Hb_000809_160 Hb_000809_160 Hb_000094_090--Hb_000809_160 Hb_000094_090--Hb_000723_110 Hb_000373_230 Hb_000373_230 Hb_000094_090--Hb_000373_230 Hb_000094_090--Hb_004870_050 Hb_001754_030--Hb_000809_160 Hb_002477_250 Hb_002477_250 Hb_001754_030--Hb_002477_250 Hb_032264_060 Hb_032264_060 Hb_001754_030--Hb_032264_060 Hb_001754_030--Hb_000723_110 Hb_000996_020 Hb_000996_020 Hb_000445_060--Hb_000996_020 Hb_000868_120 Hb_000868_120 Hb_000445_060--Hb_000868_120 Hb_000110_350 Hb_000110_350 Hb_000445_060--Hb_000110_350 Hb_002768_050 Hb_002768_050 Hb_000445_060--Hb_002768_050 Hb_000661_120 Hb_000661_120 Hb_000445_060--Hb_000661_120 Hb_000373_170 Hb_000373_170 Hb_000445_060--Hb_000373_170 Hb_007017_070 Hb_007017_070 Hb_000723_110--Hb_007017_070 Hb_000926_010 Hb_000926_010 Hb_000723_110--Hb_000926_010 Hb_000723_110--Hb_000809_160 Hb_004410_070 Hb_004410_070 Hb_000723_110--Hb_004410_070 Hb_000723_110--Hb_000373_230 Hb_000003_400 Hb_000003_400 Hb_002811_040--Hb_000003_400 Hb_000529_060 Hb_000529_060 Hb_002811_040--Hb_000529_060 Hb_002811_040--Hb_000445_060 Hb_008387_010 Hb_008387_010 Hb_002811_040--Hb_008387_010 Hb_004724_370 Hb_004724_370 Hb_002811_040--Hb_004724_370
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.405 30.4121 25.9757 13.7842 14.2553 12.9754
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.62599 9.49658 10.8932 10.9495 15.9373

CAGE analysis