Hb_023278_010

Information

Type -
Description -
Location Contig23278: 18154-25544
Sequence    

Annotation

kegg
ID rcu:RCOM_0219890
description chaperone protein DNAj, putative
nr
ID KHN31383.1
description Chaperone protein DnaJ [Glycine soja]
swissprot
ID B7KEJ8
description Chaperone protein DnaJ OS=Cyanothece sp. (strain PCC 7424) GN=dnaJ PE=3 SV=1
trembl
ID A0A0B2RHF2
description Chaperone protein DnaJ OS=Glycine soja GN=glysoja_023037 PE=4 SV=1
Gene Ontology
ID GO:0005524
description dnaj homolog mitochondrial-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24473: 17706-25382 , PASA_asmbl_24474: 19403-19816
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_023278_010 0.0 - - Chaperone protein DnaJ [Glycine soja]
2 Hb_048141_020 0.0756490352 - - tetratricopeptide repeat-like superfamily protein, partial [Manihot esculenta]
3 Hb_000816_100 0.082382787 - - PREDICTED: APO protein 1, chloroplastic isoform X1 [Jatropha curcas]
4 Hb_000076_130 0.0849613137 - - PREDICTED: tryptophan synthase beta chain 1 [Jatropha curcas]
5 Hb_006915_070 0.0892174997 - - hypothetical protein CAPTEDRAFT_111329, partial [Capitella teleta]
6 Hb_006445_010 0.089875845 - - PREDICTED: uncharacterized protein LOC105640147 [Jatropha curcas]
7 Hb_000544_010 0.0910197953 - - PREDICTED: GPI mannosyltransferase 1 [Jatropha curcas]
8 Hb_012194_050 0.0992775793 - - Aspartyl aminopeptidase, putative [Ricinus communis]
9 Hb_000665_160 0.0994211128 - - PREDICTED: cysteine--tRNA ligase, cytoplasmic isoform X1 [Jatropha curcas]
10 Hb_000429_220 0.1006512165 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105640858 isoform X1 [Jatropha curcas]
11 Hb_004218_280 0.1008832614 - - Exoenzymes regulatory protein aepA precursor, putative [Ricinus communis]
12 Hb_000034_040 0.1012353141 - - PREDICTED: histidine--tRNA ligase [Jatropha curcas]
13 Hb_001416_070 0.1013638903 - - oxidoreductase, putative [Ricinus communis]
14 Hb_004032_410 0.1019589112 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 5 isoform X2 [Jatropha curcas]
15 Hb_004994_380 0.1023926412 - - hypothetical protein JCGZ_14410 [Jatropha curcas]
16 Hb_000661_030 0.1026674098 - - PREDICTED: uncharacterized protein LOC105650374 [Jatropha curcas]
17 Hb_006909_070 0.103122208 - - ABC transporter family protein [Hevea brasiliensis]
18 Hb_007919_100 0.105597586 transcription factor TF Family: SET PREDICTED: uncharacterized protein LOC105635137 [Jatropha curcas]
19 Hb_010710_070 0.1060414823 - - PREDICTED: protein TOC75-3, chloroplastic-like [Populus euphratica]
20 Hb_007441_130 0.1065668129 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_023278_010 Hb_023278_010 Hb_048141_020 Hb_048141_020 Hb_023278_010--Hb_048141_020 Hb_000816_100 Hb_000816_100 Hb_023278_010--Hb_000816_100 Hb_000076_130 Hb_000076_130 Hb_023278_010--Hb_000076_130 Hb_006915_070 Hb_006915_070 Hb_023278_010--Hb_006915_070 Hb_006445_010 Hb_006445_010 Hb_023278_010--Hb_006445_010 Hb_000544_010 Hb_000544_010 Hb_023278_010--Hb_000544_010 Hb_048141_020--Hb_000816_100 Hb_005470_020 Hb_005470_020 Hb_048141_020--Hb_005470_020 Hb_000015_100 Hb_000015_100 Hb_048141_020--Hb_000015_100 Hb_001489_050 Hb_001489_050 Hb_048141_020--Hb_001489_050 Hb_011931_060 Hb_011931_060 Hb_048141_020--Hb_011931_060 Hb_001089_060 Hb_001089_060 Hb_000816_100--Hb_001089_060 Hb_001259_020 Hb_001259_020 Hb_000816_100--Hb_001259_020 Hb_021346_030 Hb_021346_030 Hb_000816_100--Hb_021346_030 Hb_000816_100--Hb_011931_060 Hb_000665_160 Hb_000665_160 Hb_000076_130--Hb_000665_160 Hb_000076_130--Hb_000544_010 Hb_002909_050 Hb_002909_050 Hb_000076_130--Hb_002909_050 Hb_004994_380 Hb_004994_380 Hb_000076_130--Hb_004994_380 Hb_004963_030 Hb_004963_030 Hb_000076_130--Hb_004963_030 Hb_001141_020 Hb_001141_020 Hb_000076_130--Hb_001141_020 Hb_000034_040 Hb_000034_040 Hb_006915_070--Hb_000034_040 Hb_002681_070 Hb_002681_070 Hb_006915_070--Hb_002681_070 Hb_000345_170 Hb_000345_170 Hb_006915_070--Hb_000345_170 Hb_000116_180 Hb_000116_180 Hb_006915_070--Hb_000116_180 Hb_008785_040 Hb_008785_040 Hb_006915_070--Hb_008785_040 Hb_000856_110 Hb_000856_110 Hb_006915_070--Hb_000856_110 Hb_006445_010--Hb_000544_010 Hb_002749_110 Hb_002749_110 Hb_006445_010--Hb_002749_110 Hb_007426_150 Hb_007426_150 Hb_006445_010--Hb_007426_150 Hb_000429_220 Hb_000429_220 Hb_006445_010--Hb_000429_220 Hb_000152_260 Hb_000152_260 Hb_006445_010--Hb_000152_260 Hb_028308_010 Hb_028308_010 Hb_006445_010--Hb_028308_010 Hb_000544_010--Hb_000665_160 Hb_034432_030 Hb_034432_030 Hb_000544_010--Hb_034432_030 Hb_001379_110 Hb_001379_110 Hb_000544_010--Hb_001379_110 Hb_000544_010--Hb_002749_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.5789 8.03453 8.68425 9.06667 21.3625 21.9956
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.4222 8.32742 7.49495 9.44068 22.5686

CAGE analysis