Hb_023278_020

Information

Type -
Description -
Location Contig23278: 33237-42041
Sequence    

Annotation

kegg
ID tcc:TCM_012593
description Peroxin 3 isoform 1
nr
ID XP_007036704.1
description Peroxin 3 isoform 1 [Theobroma cacao]
swissprot
ID Q8LDG7
description Peroxisome biogenesis protein 3-1 OS=Arabidopsis thaliana GN=PEX3-1 PE=2 SV=2
trembl
ID A0A061FVG5
description Peroxin 3 isoform 1 OS=Theobroma cacao GN=TCM_012593 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24476: 41176-41960
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_023278_020 0.0 - - Peroxin 3 isoform 1 [Theobroma cacao]
2 Hb_004899_370 0.0518766862 - - hypothetical protein CICLE_v10009013mg [Citrus clementina]
3 Hb_009615_070 0.0578886209 - - type X protein phosphatase-II [Populus trichocarpa]
4 Hb_004143_150 0.0718054835 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 24-like isoform X6 [Jatropha curcas]
5 Hb_004127_020 0.0801464358 - - PREDICTED: probable RNA 3'-terminal phosphate cyclase-like protein isoform X1 [Populus euphratica]
6 Hb_000001_060 0.083130584 - - PREDICTED: N(6)-adenine-specific DNA methyltransferase 2 [Jatropha curcas]
7 Hb_004889_010 0.0840915216 - - Vacuolar protein sorting-associated protein-like protein [Medicago truncatula]
8 Hb_003349_090 0.0857723917 - - PREDICTED: diphthamide biosynthesis protein 2 [Jatropha curcas]
9 Hb_000436_130 0.0871173288 - - PREDICTED: probable protein phosphatase 2C 60 [Jatropha curcas]
10 Hb_003151_040 0.0876934834 transcription factor TF Family: Alfin-like zinc finger family protein [Populus trichocarpa]
11 Hb_001766_060 0.0882846666 - - conserved hypothetical protein [Ricinus communis]
12 Hb_003414_050 0.089149823 - - PREDICTED: uncharacterized protein LOC105640180 isoform X3 [Jatropha curcas]
13 Hb_004102_110 0.0891746505 - - Monothiol glutaredoxin-4, putative [Ricinus communis]
14 Hb_003605_090 0.0900872887 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105632419 [Jatropha curcas]
15 Hb_010883_050 0.0913515071 - - PREDICTED: oxysterol-binding protein-related protein 1C-like isoform X1 [Jatropha curcas]
16 Hb_003697_040 0.0919897798 - - hypothetical protein B456_005G209600 [Gossypium raimondii]
17 Hb_011360_070 0.0927792347 - - PREDICTED: zinc finger RNA-binding protein [Jatropha curcas]
18 Hb_004635_100 0.0928043938 - - PREDICTED: L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase isoform X1 [Jatropha curcas]
19 Hb_007009_010 0.0928116867 transcription factor TF Family: TRAF PREDICTED: BTB/POZ domain-containing protein At3g05675 [Populus euphratica]
20 Hb_000261_140 0.0935169983 - - -

Gene co-expression network

sample Hb_023278_020 Hb_023278_020 Hb_004899_370 Hb_004899_370 Hb_023278_020--Hb_004899_370 Hb_009615_070 Hb_009615_070 Hb_023278_020--Hb_009615_070 Hb_004143_150 Hb_004143_150 Hb_023278_020--Hb_004143_150 Hb_004127_020 Hb_004127_020 Hb_023278_020--Hb_004127_020 Hb_000001_060 Hb_000001_060 Hb_023278_020--Hb_000001_060 Hb_004889_010 Hb_004889_010 Hb_023278_020--Hb_004889_010 Hb_004899_370--Hb_004143_150 Hb_004899_370--Hb_000001_060 Hb_003151_040 Hb_003151_040 Hb_004899_370--Hb_003151_040 Hb_004899_370--Hb_004127_020 Hb_004899_370--Hb_009615_070 Hb_003605_090 Hb_003605_090 Hb_009615_070--Hb_003605_090 Hb_007009_010 Hb_007009_010 Hb_009615_070--Hb_007009_010 Hb_009615_070--Hb_004889_010 Hb_089032_030 Hb_089032_030 Hb_009615_070--Hb_089032_030 Hb_004143_150--Hb_000001_060 Hb_000920_110 Hb_000920_110 Hb_004143_150--Hb_000920_110 Hb_004143_150--Hb_004127_020 Hb_006615_240 Hb_006615_240 Hb_004143_150--Hb_006615_240 Hb_004102_110 Hb_004102_110 Hb_004143_150--Hb_004102_110 Hb_000479_090 Hb_000479_090 Hb_004127_020--Hb_000479_090 Hb_000265_050 Hb_000265_050 Hb_004127_020--Hb_000265_050 Hb_002798_020 Hb_002798_020 Hb_004127_020--Hb_002798_020 Hb_000840_180 Hb_000840_180 Hb_004127_020--Hb_000840_180 Hb_001476_080 Hb_001476_080 Hb_000001_060--Hb_001476_080 Hb_000001_060--Hb_003151_040 Hb_000005_090 Hb_000005_090 Hb_000001_060--Hb_000005_090 Hb_001766_060 Hb_001766_060 Hb_000001_060--Hb_001766_060 Hb_005551_040 Hb_005551_040 Hb_004889_010--Hb_005551_040 Hb_003697_040 Hb_003697_040 Hb_004889_010--Hb_003697_040 Hb_003349_090 Hb_003349_090 Hb_004889_010--Hb_003349_090 Hb_034380_020 Hb_034380_020 Hb_004889_010--Hb_034380_020 Hb_004889_010--Hb_089032_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.31876 6.17841 7.15031 9.39364 4.44887 10.4656
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.5506 20.7298 14.4321 5.1101 8.64507

CAGE analysis