Hb_023278_030

Information

Type -
Description -
Location Contig23278: 47633-53446
Sequence    

Annotation

kegg
ID rcu:RCOM_0571480
description zinc finger protein, putative
nr
ID XP_002529559.1
description zinc finger protein, putative [Ricinus communis]
swissprot
ID Q8VYZ0
description E3 ubiquitin-protein ligase ORTHRUS 2 OS=Arabidopsis thaliana GN=ORTH2 PE=1 SV=1
trembl
ID B9SU90
description Zinc finger protein, putative OS=Ricinus communis GN=RCOM_0571480 PE=4 SV=1
Gene Ontology
ID GO:0008270
description e3 ubiquitin-protein ligase orthrus 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24477: 47328-53407
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_023278_030 0.0 - - zinc finger protein, putative [Ricinus communis]
2 Hb_000002_350 0.0885206301 transcription factor TF Family: SNF2 DNA repair helicase rad5,16, putative [Ricinus communis]
3 Hb_127416_010 0.110012401 - - LysM domain GPI-anchored protein 2 precursor, putative [Ricinus communis]
4 Hb_001022_050 0.1544063829 - - hypothetical protein POPTR_0016s07780g [Populus trichocarpa]
5 Hb_005545_020 0.1551805754 - - endo beta n-acetylglucosaminidase, putative [Ricinus communis]
6 Hb_002477_100 0.1601784708 - - PREDICTED: protein Brevis radix-like 2 [Jatropha curcas]
7 Hb_000529_040 0.1608993455 - - PREDICTED: uncharacterized protein LOC105641671 [Jatropha curcas]
8 Hb_000731_210 0.1667309526 - - conserved hypothetical protein [Ricinus communis]
9 Hb_003299_020 0.1669606465 - - PREDICTED: uncharacterized protein LOC105649783 [Jatropha curcas]
10 Hb_005542_030 0.1681785709 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 70 isoform X2 [Jatropha curcas]
11 Hb_043987_010 0.1685508499 - - glutathione s-transferase, putative [Ricinus communis]
12 Hb_007044_220 0.172025475 - - Allene oxide cyclase 4, chloroplast precursor, putative [Ricinus communis]
13 Hb_001048_100 0.1751105279 - - PREDICTED: lysosomal Pro-X carboxypeptidase [Jatropha curcas]
14 Hb_013358_030 0.1765362875 - - PREDICTED: U-box domain-containing protein 12-like [Jatropha curcas]
15 Hb_005333_080 0.1766474489 - - conserved hypothetical protein [Ricinus communis]
16 Hb_004551_050 0.1777600075 - - PREDICTED: glucose-6-phosphate/phosphate translocator 2, chloroplastic [Jatropha curcas]
17 Hb_001019_160 0.1778006863 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001454_290 0.1781058013 - - PREDICTED: uncharacterized protein LOC105643442 [Jatropha curcas]
19 Hb_001433_160 0.1791596603 - - phosphatase 2C family protein [Populus trichocarpa]
20 Hb_001345_020 0.1794939847 - - hypothetical protein POPTR_0007s10400g [Populus trichocarpa]

Gene co-expression network

sample Hb_023278_030 Hb_023278_030 Hb_000002_350 Hb_000002_350 Hb_023278_030--Hb_000002_350 Hb_127416_010 Hb_127416_010 Hb_023278_030--Hb_127416_010 Hb_001022_050 Hb_001022_050 Hb_023278_030--Hb_001022_050 Hb_005545_020 Hb_005545_020 Hb_023278_030--Hb_005545_020 Hb_002477_100 Hb_002477_100 Hb_023278_030--Hb_002477_100 Hb_000529_040 Hb_000529_040 Hb_023278_030--Hb_000529_040 Hb_000731_210 Hb_000731_210 Hb_000002_350--Hb_000731_210 Hb_000002_350--Hb_127416_010 Hb_005542_030 Hb_005542_030 Hb_000002_350--Hb_005542_030 Hb_003299_020 Hb_003299_020 Hb_000002_350--Hb_003299_020 Hb_000002_350--Hb_005545_020 Hb_183086_070 Hb_183086_070 Hb_127416_010--Hb_183086_070 Hb_012760_090 Hb_012760_090 Hb_127416_010--Hb_012760_090 Hb_000028_490 Hb_000028_490 Hb_127416_010--Hb_000028_490 Hb_007044_220 Hb_007044_220 Hb_127416_010--Hb_007044_220 Hb_001022_050--Hb_127416_010 Hb_000005_340 Hb_000005_340 Hb_001022_050--Hb_000005_340 Hb_000057_080 Hb_000057_080 Hb_001022_050--Hb_000057_080 Hb_001022_050--Hb_000002_350 Hb_019863_030 Hb_019863_030 Hb_001022_050--Hb_019863_030 Hb_005545_020--Hb_003299_020 Hb_000042_380 Hb_000042_380 Hb_005545_020--Hb_000042_380 Hb_000753_110 Hb_000753_110 Hb_005545_020--Hb_000753_110 Hb_001754_050 Hb_001754_050 Hb_005545_020--Hb_001754_050 Hb_004883_020 Hb_004883_020 Hb_005545_020--Hb_004883_020 Hb_007575_030 Hb_007575_030 Hb_005545_020--Hb_007575_030 Hb_043987_010 Hb_043987_010 Hb_002477_100--Hb_043987_010 Hb_002030_180 Hb_002030_180 Hb_002477_100--Hb_002030_180 Hb_002597_020 Hb_002597_020 Hb_002477_100--Hb_002597_020 Hb_000020_070 Hb_000020_070 Hb_002477_100--Hb_000020_070 Hb_001318_110 Hb_001318_110 Hb_002477_100--Hb_001318_110 Hb_086639_050 Hb_086639_050 Hb_000529_040--Hb_086639_050 Hb_000181_270 Hb_000181_270 Hb_000529_040--Hb_000181_270 Hb_080147_020 Hb_080147_020 Hb_000529_040--Hb_080147_020 Hb_001117_080 Hb_001117_080 Hb_000529_040--Hb_001117_080 Hb_002518_200 Hb_002518_200 Hb_000529_040--Hb_002518_200 Hb_000567_090 Hb_000567_090 Hb_000529_040--Hb_000567_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.102071 3.78671 10.2544 7.18494 0.0490601 0.0952202
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.348942 0.50338 1.16103 6.69778 1.74735

CAGE analysis