Hb_023292_010

Information

Type -
Description -
Location Contig23292: 10161-23219
Sequence    

Annotation

kegg
ID rcu:RCOM_1482950
description Cucumisin precursor, putative (EC:3.4.21.25)
nr
ID XP_002524249.1
description Cucumisin precursor, putative [Ricinus communis]
swissprot
ID Q39547
description Cucumisin OS=Cucumis melo PE=1 SV=1
trembl
ID B9SE30
description Cucumisin, putative OS=Ricinus communis GN=RCOM_1482950 PE=4 SV=1
Gene Ontology
ID GO:0004252
description subtilisin-like serine endopeptidase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_023292_010 0.0 - - Cucumisin precursor, putative [Ricinus communis]
2 Hb_001073_050 0.1005341878 - - -
3 Hb_001357_080 0.1007978728 - - hypothetical protein POPTR_0005s15590g [Populus trichocarpa]
4 Hb_003018_190 0.1116243007 - - PREDICTED: pentatricopeptide repeat-containing protein At4g31070, mitochondrial [Jatropha curcas]
5 Hb_002603_160 0.1122141351 - - Arginyl-tRNA--protein transferase, putative [Ricinus communis]
6 Hb_006935_050 0.1133297269 - - PREDICTED: probable glutathione peroxidase 2 [Populus euphratica]
7 Hb_100804_010 0.11635174 - - BAHD family acyltransferase, clade V, putative [Theobroma cacao]
8 Hb_001633_170 0.1166854567 - - PREDICTED: aspartokinase 2, chloroplastic-like isoform X1 [Jatropha curcas]
9 Hb_154648_010 0.1167094772 - - PREDICTED: uncharacterized protein LOC105634412 isoform X2 [Jatropha curcas]
10 Hb_005625_020 0.118057997 transcription factor TF Family: bZIP PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 2 isoform X1 [Jatropha curcas]
11 Hb_001153_220 0.1216986997 - - PREDICTED: UDP-galactose/UDP-glucose transporter 2 [Jatropha curcas]
12 Hb_000099_200 0.1231114809 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001811_020 0.1243870405 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000162_040 0.1262633894 - - PREDICTED: pentatricopeptide repeat-containing protein At2g21090 [Jatropha curcas]
15 Hb_001141_280 0.1271682927 - - PREDICTED: pentatricopeptide repeat-containing protein At4g14820 [Vitis vinifera]
16 Hb_064997_010 0.127806594 - - hypothetical protein JCGZ_19852 [Jatropha curcas]
17 Hb_005701_010 0.1288793311 - - PREDICTED: uncharacterized protein LOC105633877 isoform X1 [Jatropha curcas]
18 Hb_000363_160 0.1298829898 - - Heterogeneous nuclear ribonucleoprotein 27C, putative [Ricinus communis]
19 Hb_008311_010 0.1312063053 - - hypothetical protein CARUB_v10003781mg [Capsella rubella]
20 Hb_131864_040 0.1320621694 - - PREDICTED: uncharacterized protein LOC105649406 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_023292_010 Hb_023292_010 Hb_001073_050 Hb_001073_050 Hb_023292_010--Hb_001073_050 Hb_001357_080 Hb_001357_080 Hb_023292_010--Hb_001357_080 Hb_003018_190 Hb_003018_190 Hb_023292_010--Hb_003018_190 Hb_002603_160 Hb_002603_160 Hb_023292_010--Hb_002603_160 Hb_006935_050 Hb_006935_050 Hb_023292_010--Hb_006935_050 Hb_100804_010 Hb_100804_010 Hb_023292_010--Hb_100804_010 Hb_010436_060 Hb_010436_060 Hb_001073_050--Hb_010436_060 Hb_004056_030 Hb_004056_030 Hb_001073_050--Hb_004056_030 Hb_001073_050--Hb_002603_160 Hb_064441_010 Hb_064441_010 Hb_001073_050--Hb_064441_010 Hb_001073_050--Hb_001357_080 Hb_002539_090 Hb_002539_090 Hb_001357_080--Hb_002539_090 Hb_000046_110 Hb_000046_110 Hb_001357_080--Hb_000046_110 Hb_001357_080--Hb_010436_060 Hb_000751_130 Hb_000751_130 Hb_001357_080--Hb_000751_130 Hb_006641_010 Hb_006641_010 Hb_001357_080--Hb_006641_010 Hb_029866_070 Hb_029866_070 Hb_001357_080--Hb_029866_070 Hb_131864_040 Hb_131864_040 Hb_003018_190--Hb_131864_040 Hb_000997_400 Hb_000997_400 Hb_003018_190--Hb_000997_400 Hb_003018_190--Hb_002603_160 Hb_001141_280 Hb_001141_280 Hb_003018_190--Hb_001141_280 Hb_005488_010 Hb_005488_010 Hb_003018_190--Hb_005488_010 Hb_006846_110 Hb_006846_110 Hb_003018_190--Hb_006846_110 Hb_002603_160--Hb_131864_040 Hb_002603_160--Hb_006846_110 Hb_005188_090 Hb_005188_090 Hb_002603_160--Hb_005188_090 Hb_000223_150 Hb_000223_150 Hb_002603_160--Hb_000223_150 Hb_002603_160--Hb_001141_280 Hb_001433_220 Hb_001433_220 Hb_006935_050--Hb_001433_220 Hb_000139_380 Hb_000139_380 Hb_006935_050--Hb_000139_380 Hb_000099_200 Hb_000099_200 Hb_006935_050--Hb_000099_200 Hb_000025_480 Hb_000025_480 Hb_006935_050--Hb_000025_480 Hb_000049_070 Hb_000049_070 Hb_006935_050--Hb_000049_070 Hb_100804_010--Hb_001073_050 Hb_006472_050 Hb_006472_050 Hb_100804_010--Hb_006472_050 Hb_001153_220 Hb_001153_220 Hb_100804_010--Hb_001153_220 Hb_100804_010--Hb_001357_080 Hb_000363_160 Hb_000363_160 Hb_100804_010--Hb_000363_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.315741 0.102874 0.0959864 0.208832 0.350099 0.924022
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.550233 0.597836 1.40185 0.19711 0.173527

CAGE analysis